Variant report

Variant	rs995563
Chromosome Location	chr6:46082937-46082938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:46082464..46084526-chr6:46096040..46098062,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000001561	Chromatin interaction
ENSG00000231769	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1011370	0.86[CEU][hapmap];0.91[CHB][hapmap]
rs1047153	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1048077	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs1076738	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13210417	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3734208	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4496799	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4714902	0.84[CEU][hapmap]
rs5011271	0.92[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs6900403	1.00[ASN][1000 genomes]
rs6921636	0.99[ASN][1000 genomes]
rs6921826	0.81[CEU][hapmap]
rs7754915	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs7760042	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7762549	0.93[ASN][1000 genomes]
rs7766019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772635	0.90[EUR][1000 genomes]
rs9367235	0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9369597	0.96[CEU][hapmap]
rs9369598	0.94[ASN][1000 genomes]
rs9395154	0.94[ASN][1000 genomes]
rs9395156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472686	0.94[ASN][1000 genomes]
rs9472701	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472703	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472712	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs993632	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs995563	ENPP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46071600-46086800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:46078200-46086800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:46078600-46086600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:46080200-46095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:46080400-46085200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:46080600-46095400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:46080800-46083000	Strong transcription	Primary T cells from cord blood	blood
8	chr6:46081200-46087200	Weak transcription	Aorta	Aorta
9	chr6:46081600-46086400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:46081600-46096400	Weak transcription	Thymus	Thymus
11	chr6:46082200-46083200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:46082400-46083200	Enhancers	Psoas Muscle	Psoas
13	chr6:46082400-46087200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:46082600-46083200	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links