Variant report
| Variant | rs7772635 |
|---|---|
| Chromosome Location | chr6:46058361-46058362 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:46057596..46058911-chr6:46174639..46175627,5 | MCF-7 | breast: | |
| 2 | chr6:45897955..45898801-chr6:46057521..46058514,3 | MCF-7 | breast: | |
| 3 | chr6:46057463..46058547-chr6:46377587..46378702,8 | K562 | blood: | |
| 4 | chr6:46057650..46058456-chr6:46071148..46071923,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1011370 | 0.81[CEU][hapmap] |
| rs1047153 | 0.96[CEU][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs1048077 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1076738 | 0.81[CEU][hapmap] |
| rs13210417 | 0.96[EUR][1000 genomes] |
| rs2143745 | 0.84[AMR][1000 genomes] |
| rs2206964 | 0.84[AMR][1000 genomes] |
| rs2223776 | 0.84[AMR][1000 genomes] |
| rs3734208 | 0.86[EUR][1000 genomes] |
| rs4496799 | 0.95[EUR][1000 genomes] |
| rs4714902 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs5011271 | 0.88[CEU][hapmap] |
| rs7754915 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7760042 | 0.88[EUR][1000 genomes] |
| rs7766019 | 0.96[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs9367235 | 0.87[EUR][1000 genomes] |
| rs9369597 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs9395156 | 0.96[CEU][hapmap];0.81[GIH][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs9472701 | 0.87[EUR][1000 genomes] |
| rs9472703 | 0.87[EUR][1000 genomes] |
| rs9472712 | 0.82[EUR][1000 genomes] |
| rs993632 | 0.90[EUR][1000 genomes] |
| rs995563 | 0.96[CEU][hapmap];0.90[EUR][1000 genomes] |
mRNA abundance (count:9)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7772635 | ENPP4 | Cis_1M | lymphoblastoid | RTeQTL |
| rs7772635 | ENPP5 | cis | parietal | SCAN |
| rs7772635 | PPP2R5D | cis | cerebellum | SCAN |
| rs7772635 | ENPP4 | cis | parietal | SCAN |
| rs7772635 | RHAG | cis | cerebellum | SCAN |
| rs7772635 | ZNF318 | cis | parietal | SCAN |
| rs7772635 | ENPP5 | cis | cerebellum | SCAN |
| rs7772635 | CLIC5 | cis | parietal | SCAN |
| rs7772635 | ENPP4 | cis | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:46057600-46058400 | Enhancers | Fetal Kidney | kidney |
| 2 | chr6:46058200-46058800 | Enhancers | Liver | Liver |
