Variant report

Variant	rs4714902
Chromosome Location	chr6:46044237-46044238
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1047153	0.84[CEU][hapmap]
rs1048077	1.00[ASW][hapmap];0.88[CEU][hapmap]
rs7754915	1.00[ASW][hapmap];0.88[CEU][hapmap]
rs7766019	0.84[CEU][hapmap]
rs7772635	0.81[EUR][1000 genomes]
rs9369597	0.87[CEU][hapmap]
rs9395156	0.84[CEU][hapmap]
rs995563	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs4714902	ENPP4	Cis_1M	lymphoblastoid	RTeQTL
rs4714902	ZNF318	cis	parietal	SCAN
rs4714902	ENPP5	cis	parietal	SCAN
rs4714902	RHAG	cis	cerebellum	SCAN
rs4714902	CLIC5	cis	parietal	SCAN
rs4714902	ENPP5	cis	cerebellum	SCAN
rs4714902	ENPP4	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46038800-46047400	Weak transcription	Psoas Muscle	Psoas
2	chr6:46043800-46044600	Genic enhancers	Fetal Intestine Large	intestine
3	chr6:46043800-46044800	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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