Variant report

Variant	rs1047153
Chromosome Location	chr6:46128745-46128746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	miRNA target gene	miRNA name	Chromosome Location
1	ENPP5	hsa-miR-17-5p	chr6:46128733-46128754
2	ENPP5	hsa-miR-19b-3p	chr6:46128736-46128758
3	ENPP5	hsa-miR-130b-3p	chr6:46128735-46128755

Variant related genes	Relation type
ENPP5	miRNA target site

Extended variants
information (count: 23 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1011370	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1048077	0.96[CEU][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs1076738	0.85[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs13210417	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3734208	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4496799	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4714902	0.84[CEU][hapmap]
rs5011271	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6900403	0.85[ASN][1000 genomes]
rs6921636	0.83[ASN][1000 genomes]
rs7754915	0.96[CEU][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs7760042	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7762549	0.91[ASN][1000 genomes]
rs7766019	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7772635	0.87[EUR][1000 genomes]
rs9367235	0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9369597	0.96[CEU][hapmap]
rs9395156	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9472701	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9472703	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9472712	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs993632	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs995563	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs1047153	ENPP4	cis	lymphoblastoid	seeQTL
rs1047153	ENPP5	cis	cerebellum	SCAN
rs1047153	PPP2R5D	cis	cerebellum	SCAN
rs1047153	RHAG	cis	cerebellum	SCAN
rs1047153	CRISP3	cis	parietal	SCAN
rs1047153	CLIC5	cis	parietal	SCAN
rs1047153	ENPP4	Cis_1M	lymphoblastoid	RTeQTL
rs1047153	ENPP4	cis	parietal	SCAN
rs1047153	ZNF318	cis	parietal	SCAN
rs1047153	ENPP5	cis	parietal	SCAN

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46098800-46129000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:46105400-46133800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:46105600-46137400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:46106400-46138000	Weak transcription	Lung	lung
5	chr6:46108000-46130000	Weak transcription	Brain Substantia Nigra	brain
6	chr6:46111400-46128800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:46111400-46137800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:46111600-46138000	Weak transcription	Fetal Thymus	thymus
9	chr6:46122800-46138000	Weak transcription	Pancreas	Pancrea
10	chr6:46123400-46137600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:46123800-46138000	Weak transcription	Fetal Brain Male	brain
12	chr6:46124000-46128800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:46124000-46128800	Weak transcription	Brain Anterior Caudate	brain
14	chr6:46124000-46137400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:46124600-46137600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:46124800-46137800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:46125600-46129200	Weak transcription	Aorta	Aorta
18	chr6:46125600-46131000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:46126000-46138000	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:46126200-46137800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:46126200-46138000	Weak transcription	Fetal Intestine Large	intestine
22	chr6:46126400-46137800	Weak transcription	Fetal Intestine Small	intestine
23	chr6:46127000-46138000	Weak transcription	Ovary	ovary
24	chr6:46127200-46137800	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:46127400-46130400	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:46127400-46137800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:46127600-46130200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:46127600-46130800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:46127600-46137600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:46127600-46137600	Weak transcription	Fetal Kidney	kidney
31	chr6:46127800-46130600	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:46128000-46128800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:46128000-46132200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:46128200-46129400	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:46128400-46129400	Enhancers	Fetal Heart	heart
36	chr6:46128400-46129600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:46128600-46129400	Strong transcription	Brain Cingulate Gyrus	brain
38	chr6:46128600-46130400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:46128600-46130400	Strong transcription	Brain Angular Gyrus	brain
40	chr6:46128600-46130600	Strong transcription	Primary T cells from cord blood	blood

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