Variant report

Variant	rs6900403
Chromosome Location	chr6:46085866-46085867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1011370	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1047153	0.85[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1048076	0.82[CEU][hapmap]
rs1048077	0.84[CEU][hapmap]
rs1076738	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12196107	0.83[CEU][hapmap]
rs13210417	0.94[ASN][1000 genomes]
rs14781	0.82[CEU][hapmap]
rs2143747	0.82[CEU][hapmap]
rs2179760	0.82[CEU][hapmap]
rs3734208	0.92[ASN][1000 genomes]
rs3756802	0.82[CEU][hapmap]
rs3806995	0.82[CEU][hapmap]
rs4496799	0.93[ASN][1000 genomes]
rs5011271	0.84[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs6458491	0.82[CEU][hapmap]
rs6921636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6926570	0.82[CEU][hapmap]
rs6930766	0.82[CEU][hapmap]
rs7357078	0.82[CEU][hapmap]
rs7754915	0.81[CEU][hapmap]
rs7760042	0.99[ASN][1000 genomes]
rs7762549	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7766019	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7769738	0.83[CEU][hapmap]
rs7770384	0.82[CEU][hapmap]
rs7775082	0.82[CEU][hapmap]
rs910179	0.82[CEU][hapmap]
rs9357500	0.82[CEU][hapmap]
rs9367235	0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs9369597	0.81[CEU][hapmap]
rs9369598	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9369600	0.82[CEU][hapmap]
rs9381430	0.83[CEU][hapmap]
rs9395154	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9395156	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9472686	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9472691	0.81[AMR][1000 genomes]
rs9472701	0.91[ASN][1000 genomes]
rs9472703	0.91[ASN][1000 genomes]
rs9472712	0.81[ASN][1000 genomes]
rs993632	1.00[ASN][1000 genomes]
rs995563	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs995564	0.82[CEU][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46071600-46086800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:46078200-46086800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:46078600-46086600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:46080200-46095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:46080600-46095400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:46081200-46087200	Weak transcription	Aorta	Aorta
7	chr6:46081600-46086400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:46081600-46096400	Weak transcription	Thymus	Thymus
9	chr6:46082400-46087200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:46083000-46087200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:46083000-46096200	Weak transcription	Primary T cells from cord blood	blood

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