Variant report

Variant	rs9472686
Chromosome Location	chr6:46074656-46074657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1011370	0.92[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1047153	0.86[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.87[MKK][hapmap]
rs1048076	0.86[GIH][hapmap]
rs1076738	0.92[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13210417	1.00[ASN][1000 genomes]
rs14781	0.81[GIH][hapmap]
rs2143747	0.88[GIH][hapmap]
rs2179760	0.88[GIH][hapmap]
rs3734208	0.87[ASN][1000 genomes]
rs3806995	0.83[GIH][hapmap]
rs4496799	0.97[ASN][1000 genomes]
rs5011271	0.86[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap]
rs6458491	0.88[GIH][hapmap]
rs6900403	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6921636	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6926570	0.81[GIH][hapmap]
rs6930766	0.81[GIH][hapmap]
rs7357078	0.86[GIH][hapmap]
rs7760042	0.94[ASN][1000 genomes]
rs7762549	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766019	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7775082	0.88[GIH][hapmap]
rs910179	0.84[GIH][hapmap]
rs9367235	0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs9369598	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395154	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395156	0.95[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9472691	0.80[AMR][1000 genomes]
rs9472701	0.85[ASN][1000 genomes]
rs9472703	0.85[ASN][1000 genomes]
rs993632	0.94[ASN][1000 genomes]
rs995563	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs995564	0.88[GIH][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs9472686	ENPP5	cis	parietal	SCAN
rs9472686	TJAP1	cis	parietal	SCAN
rs9472686	ENPP5	cis	cerebellum	SCAN
rs9472686	ENPP4	cis	parietal	SCAN
rs9472686	CLIC5	cis	parietal	SCAN
rs9472686	ZNF318	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46063000-46080800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:46066800-46076800	Weak transcription	Pancreas	Pancrea
3	chr6:46071600-46086800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:46073800-46075000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:46074600-46075000	Weak transcription	Fetal Intestine Small	intestine

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