Variant report

Variant	rs9395156
Chromosome Location	chr6:46083971-46083972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:46082464..46084526-chr6:46096040..46098062,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000001561	Chromatin interaction
ENSG00000231769	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1011370	0.85[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1047153	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1048076	0.80[GIH][hapmap]
rs1048077	0.96[CEU][hapmap];0.81[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs1076738	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.80[MEX][hapmap];0.98[ASN][1000 genomes]
rs13210417	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2143747	0.82[GIH][hapmap]
rs2179760	0.82[GIH][hapmap]
rs3734208	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4496799	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4714902	0.84[CEU][hapmap]
rs5011271	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes]
rs6458491	0.82[GIH][hapmap]
rs6900403	1.00[ASN][1000 genomes]
rs6921636	0.99[ASN][1000 genomes]
rs7357078	0.80[GIH][hapmap]
rs7754915	0.96[CEU][hapmap];0.81[GIH][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs7760042	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7762549	0.93[ASN][1000 genomes]
rs7766019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772635	0.90[EUR][1000 genomes]
rs7775082	0.82[GIH][hapmap]
rs9367235	0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9369597	0.96[CEU][hapmap]
rs9369598	0.94[ASN][1000 genomes]
rs9395154	0.94[ASN][1000 genomes]
rs9472686	0.94[ASN][1000 genomes]
rs9472701	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472703	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472712	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs993632	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs995563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs995564	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3432098	chr6:46083866-46084005	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs9395156	RHAG	cis	cerebellum	SCAN
rs9395156	ENPP5	cis	parietal	SCAN
rs9395156	CLIC5	cis	parietal	SCAN
rs9395156	PPP2R5D	cis	cerebellum	SCAN
rs9395156	ENPP5	cis	cerebellum	SCAN
rs9395156	CRISP3	cis	parietal	SCAN
rs9395156	ENPP4	cis	parietal	SCAN
rs9395156	ZNF318	cis	parietal	SCAN
rs9395156	ENPP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46071600-46086800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:46078200-46086800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:46078600-46086600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:46080200-46095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:46080400-46085200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:46080600-46095400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:46081200-46087200	Weak transcription	Aorta	Aorta
8	chr6:46081600-46086400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:46081600-46096400	Weak transcription	Thymus	Thymus
10	chr6:46082400-46087200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:46083000-46087200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:46083000-46096200	Weak transcription	Primary T cells from cord blood	blood
13	chr6:46083200-46084000	Weak transcription	Psoas Muscle	Psoas

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