Variant report

Variant	rs993632
Chromosome Location	chr6:46086257-46086258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1011370	0.84[CEU][hapmap];0.91[CHB][hapmap]
rs1047153	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1048077	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs1076738	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13210417	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3734208	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4496799	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4714902	0.82[CEU][hapmap]
rs5011271	0.91[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs6900403	1.00[ASN][1000 genomes]
rs6921636	0.99[ASN][1000 genomes]
rs6921826	0.80[CEU][hapmap]
rs7754915	0.95[CEU][hapmap];0.97[EUR][1000 genomes]
rs7760042	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7762549	0.93[ASN][1000 genomes]
rs7766019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772635	0.90[EUR][1000 genomes]
rs9367235	0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9369597	0.95[CEU][hapmap]
rs9369598	0.94[ASN][1000 genomes]
rs9395154	0.94[ASN][1000 genomes]
rs9395156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472686	0.94[ASN][1000 genomes]
rs9472701	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472703	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472712	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs995563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs993632	ENPP4	cis	multi-tissue	Pritchard
rs993632	ENPP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46071600-46086800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:46078200-46086800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:46078600-46086600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:46080200-46095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:46080600-46095400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:46081200-46087200	Weak transcription	Aorta	Aorta
7	chr6:46081600-46086400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:46081600-46096400	Weak transcription	Thymus	Thymus
9	chr6:46082400-46087200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:46083000-46087200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:46083000-46096200	Weak transcription	Primary T cells from cord blood	blood

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