Variant report

Variant	rs9472703
Chromosome Location	chr6:46117964-46117965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:46112224..46114185-chr6:46116270..46118117,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1011370	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1047153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1048077	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs1076738	0.83[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs13210417	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3734208	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4496799	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4714902	0.82[CEU][hapmap]
rs5011271	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6900403	0.91[ASN][1000 genomes]
rs6921636	0.89[ASN][1000 genomes]
rs6921826	0.82[CEU][hapmap]
rs7754915	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs7760042	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7762549	0.97[ASN][1000 genomes]
rs7766019	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7772635	0.87[EUR][1000 genomes]
rs9367235	0.89[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369597	0.95[CEU][hapmap]
rs9369598	0.85[ASN][1000 genomes]
rs9395154	0.85[ASN][1000 genomes]
rs9395156	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472686	0.85[ASN][1000 genomes]
rs9472701	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472712	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs993632	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs995563	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842212	chr6:46111940-46127836	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9472703	ENPP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46098800-46129000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:46105400-46133800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:46105600-46128600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:46105600-46137400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:46106400-46125400	Weak transcription	Psoas Muscle	Psoas
6	chr6:46106400-46138000	Weak transcription	Lung	lung
7	chr6:46108000-46130000	Weak transcription	Brain Substantia Nigra	brain
8	chr6:46111400-46125200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:46111400-46128600	Weak transcription	Primary T cells from cord blood	blood
10	chr6:46111400-46128800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:46111400-46137800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:46111600-46138000	Weak transcription	Fetal Thymus	thymus
13	chr6:46114000-46125600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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