Variant report

Variant	rs1076736
Chromosome Location	chr6:46140907-46140908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:46140752-46140995	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENPP5	TF binding region

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1048076	1.00[YRI][hapmap]
rs1048079	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1048083	0.82[AFR][1000 genomes]
rs1076737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10948280	0.93[EUR][1000 genomes]
rs11756160	0.95[EUR][1000 genomes]
rs11758852	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12526912	0.86[AFR][1000 genomes]
rs12665453	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs14781	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2006030	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2022422	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2022423	0.83[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs2143746	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2179757	0.91[EUR][1000 genomes]
rs2206965	0.84[AFR][1000 genomes]
rs2206967	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2235881	0.84[AFR][1000 genomes]
rs2235883	0.84[AFR][1000 genomes]
rs2295016	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2295017	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2295018	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2894662	0.84[AFR][1000 genomes]
rs3756801	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3777634	0.82[AFR][1000 genomes]
rs3806994	0.86[AFR][1000 genomes]
rs3806995	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs3891763	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3905440	0.84[AFR][1000 genomes]
rs6458488	0.89[EUR][1000 genomes]
rs6458489	0.92[EUR][1000 genomes]
rs6458492	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6902187	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6921870	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6923745	0.84[AFR][1000 genomes]
rs6926570	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6930766	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6940977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6941587	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7356841	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7356846	0.87[CHB][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7740398	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7745824	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7748442	0.84[AFR][1000 genomes]
rs7760123	0.92[EUR][1000 genomes]
rs7769738	1.00[YRI][hapmap]
rs7770384	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9349345	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs9349348	0.84[AFR][1000 genomes]
rs9357501	0.84[AFR][1000 genomes]
rs9357502	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9367237	0.84[AFR][1000 genomes]
rs9369600	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9369601	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9369602	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9381421	0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs9381430	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9395155	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9395159	0.82[AFR][1000 genomes]
rs9463184	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9463185	0.82[AFR][1000 genomes]
rs9472684	0.83[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs9472688	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9472689	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9472690	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9472692	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9472699	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9472700	0.82[AFR][1000 genomes]
rs9472705	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9472707	0.84[AFR][1000 genomes]
rs9472708	0.81[AFR][1000 genomes]
rs9472709	0.84[AFR][1000 genomes]
rs9472713	0.86[AFR][1000 genomes]
rs9472714	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9472715	0.86[AFR][1000 genomes]
rs9763	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46139200-46141600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:46139200-46141800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:46139200-46142000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:46139200-46142200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:46139200-46143600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:46139200-46160800	Weak transcription	Aorta	Aorta
7	chr6:46139400-46141600	Weak transcription	Brain Substantia Nigra	brain
8	chr6:46139400-46141600	Weak transcription	Fetal Thymus	thymus
9	chr6:46139400-46142200	Weak transcription	GM12878-XiMat	blood
10	chr6:46139400-46142400	Weak transcription	Primary T cells from cord blood	blood
11	chr6:46139600-46141000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:46139600-46141400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:46139600-46141600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:46139600-46141800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:46139600-46141800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:46140000-46141600	Weak transcription	Brain Angular Gyrus	brain
17	chr6:46140600-46142000	Weak transcription	Brain Anterior Caudate	brain
18	chr6:46140600-46143800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr6:46140800-46141000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:46140800-46141600	Weak transcription	Psoas Muscle	Psoas

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