Variant report

Variant	rs6940977
Chromosome Location	chr6:46141745-46141746
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr6:46141658-46141878	SK-N-SH_RA	brain:	n/a	chr6:46141799-46141810
2	USF1	chr6:46141711-46141854	HepG2	liver:	n/a	chr6:46141799-46141810
3	USF1	chr6:46141555-46141957	H1-hESC	embryonic stem cell:	n/a	chr6:46141799-46141810
4	USF2	chr6:46141707-46141808	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENPP5	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1048079	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1076736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1076737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10948280	0.92[EUR][1000 genomes]
rs11756160	0.94[EUR][1000 genomes]
rs11758852	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12665453	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2006030	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2022422	0.81[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2022423	0.83[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs2143746	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2179757	0.90[EUR][1000 genomes]
rs2206967	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2295016	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2295017	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2295018	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3756801	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3891763	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6458488	0.89[EUR][1000 genomes]
rs6458489	0.91[EUR][1000 genomes]
rs6458492	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6902187	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6921870	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6941587	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7356841	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7356846	0.88[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7740398	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7745824	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7760123	0.91[EUR][1000 genomes]
rs9349345	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs9357502	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9369601	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9369602	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9381421	0.81[CEU][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs9395155	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9463184	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9472684	0.83[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs9472688	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9472689	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9472690	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9472692	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9472699	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9472705	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9472714	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9763	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46139200-46141800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:46139200-46142000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:46139200-46142200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:46139200-46143600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:46139200-46160800	Weak transcription	Aorta	Aorta
6	chr6:46139400-46142200	Weak transcription	GM12878-XiMat	blood
7	chr6:46139400-46142400	Weak transcription	Primary T cells from cord blood	blood
8	chr6:46139600-46141800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:46139600-46141800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:46140600-46142000	Weak transcription	Brain Anterior Caudate	brain
11	chr6:46140600-46143800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:46141400-46142600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:46141400-46145400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:46141600-46141800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:46141600-46141800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:46141600-46141800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:46141600-46141800	Enhancers	Fetal Thymus	thymus
18	chr6:46141600-46141800	Enhancers	Psoas Muscle	Psoas
19	chr6:46141600-46142600	Enhancers	Brain Angular Gyrus	brain
20	chr6:46141600-46142600	Enhancers	Brain Substantia Nigra	brain
21	chr6:46141600-46144800	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links