Variant report

Variant	rs7760123
Chromosome Location	chr6:46068500-46068501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1048079	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1076736	0.92[EUR][1000 genomes]
rs1076737	0.92[EUR][1000 genomes]
rs10948280	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756160	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11758852	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12665453	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2006030	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2022422	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2022423	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2143746	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2179757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206967	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2295016	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2295017	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2295018	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3756801	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3891763	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6458488	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6458489	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6458492	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6902187	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6921870	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6940977	0.91[EUR][1000 genomes]
rs6941587	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7356841	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7356846	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7740398	0.92[EUR][1000 genomes]
rs7745824	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7754582	0.90[AFR][1000 genomes]
rs9357502	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9367233	0.90[AFR][1000 genomes]
rs9369601	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9381421	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9395155	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9463184	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472684	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9472688	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9472689	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9472690	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9472692	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9472699	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472705	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472714	0.92[EUR][1000 genomes]
rs9763	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46062800-46068800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:46062800-46071200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:46063000-46080800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:46063200-46071400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:46064200-46068600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:46064400-46072800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:46064600-46069400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:46064600-46071400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:46066200-46070000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:46066600-46070200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:46066800-46068600	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:46066800-46070000	Weak transcription	Left Ventricle	heart
13	chr6:46066800-46076800	Weak transcription	Pancreas	Pancrea
14	chr6:46067000-46070000	Weak transcription	HMEC	breast
15	chr6:46067800-46070800	Weak transcription	Brain Anterior Caudate	brain
16	chr6:46068000-46072000	Weak transcription	Spleen	Spleen
17	chr6:46068200-46068600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:46068400-46071000	Weak transcription	Psoas Muscle	Psoas
19	chr6:46068400-46071200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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