Variant report

Variant	rs9463184
Chromosome Location	chr6:46094919-46094920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1048079	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1076736	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1076737	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10948280	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11754760	0.84[AFR][1000 genomes]
rs11756160	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11758852	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12196107	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12215921	0.85[AFR][1000 genomes]
rs12665453	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210366	0.84[AFR][1000 genomes]
rs2006030	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2022422	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2022423	0.82[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2143746	0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2143747	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs2179757	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2179760	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs2206967	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206968	0.84[AFR][1000 genomes]
rs2223777	0.87[AFR][1000 genomes]
rs2223778	0.87[AFR][1000 genomes]
rs2295016	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2295017	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2295018	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3756801	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756802	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs3756803	0.87[AFR][1000 genomes]
rs3891763	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6458488	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6458489	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6458490	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs6458491	0.85[AFR][1000 genomes]
rs6458492	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6902187	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6921870	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6940977	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6941587	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71566566	0.86[AFR][1000 genomes]
rs7356841	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7356846	0.94[CHB][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7357078	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs7451713	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs7740398	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7745824	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7760123	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7773230	0.84[AFR][1000 genomes]
rs7775082	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs8180644	0.87[AFR][1000 genomes]
rs872859	0.85[AFR][1000 genomes]
rs910179	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9349345	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs9357500	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9357502	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9367234	0.88[AFR][1000 genomes]
rs9369599	0.87[AFR][1000 genomes]
rs9369601	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9369602	0.81[EUR][1000 genomes]
rs9381421	0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9395155	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9395158	0.84[YRI][hapmap];0.85[AFR][1000 genomes]
rs9472684	0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472688	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9472689	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9472690	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9472692	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472698	0.85[AFR][1000 genomes]
rs9472699	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472705	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472714	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9763	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs995564	0.93[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022912	chr6:46093409-46116449	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46080200-46095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:46080600-46095400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:46081600-46096400	Weak transcription	Thymus	Thymus
4	chr6:46083000-46096200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:46087400-46095400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:46087400-46095600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:46087400-46097000	Weak transcription	Aorta	Aorta
8	chr6:46088400-46095600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:46088400-46095600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:46093400-46096400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:46093600-46095400	Weak transcription	Psoas Muscle	Psoas
12	chr6:46094000-46095400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:46094000-46095800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:46094200-46096800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:46094400-46096800	Enhancers	Primary B cells from cord blood	blood
16	chr6:46094600-46095200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:46094600-46095600	Weak transcription	Stomach Mucosa	stomach
18	chr6:46094800-46095200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:46094800-46095600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:46094800-46096800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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