Variant report

Variant	rs2006030
Chromosome Location	chr6:46087456-46087457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1048079	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1076736	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1076737	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10948280	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11754760	0.84[AFR][1000 genomes]
rs11756160	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11758852	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12196107	0.85[AFR][1000 genomes]
rs12215921	0.85[AFR][1000 genomes]
rs12665453	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13210366	0.84[AFR][1000 genomes]
rs2022422	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2022423	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2143746	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2143747	0.84[AFR][1000 genomes]
rs2179757	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2179760	0.85[AFR][1000 genomes]
rs2206967	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206968	0.84[AFR][1000 genomes]
rs2223777	0.87[AFR][1000 genomes]
rs2223778	0.87[AFR][1000 genomes]
rs2295016	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2295017	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2295018	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3756801	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3756802	0.87[AFR][1000 genomes]
rs3756803	0.87[AFR][1000 genomes]
rs3891763	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6458488	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6458489	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6458490	0.85[AFR][1000 genomes]
rs6458491	0.85[AFR][1000 genomes]
rs6458492	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6902187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6921870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6940977	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6941587	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71566566	0.86[AFR][1000 genomes]
rs7356841	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7356846	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7357078	0.85[AFR][1000 genomes]
rs7451713	0.85[AFR][1000 genomes]
rs7740398	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7745824	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7760123	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7773230	0.84[AFR][1000 genomes]
rs7775082	0.87[AFR][1000 genomes]
rs8180644	0.87[AFR][1000 genomes]
rs872859	0.85[AFR][1000 genomes]
rs910179	0.85[AFR][1000 genomes]
rs9357500	0.87[AFR][1000 genomes]
rs9357502	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9367234	0.88[AFR][1000 genomes]
rs9369599	0.87[AFR][1000 genomes]
rs9369601	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9369602	0.81[EUR][1000 genomes]
rs9381421	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9395155	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9395158	0.85[AFR][1000 genomes]
rs9463184	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9472684	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472689	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9472690	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9472692	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9472698	0.85[AFR][1000 genomes]
rs9472699	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9472705	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9472714	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9763	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs995564	0.87[AFR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46080200-46095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:46080600-46095400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:46081600-46096400	Weak transcription	Thymus	Thymus
4	chr6:46083000-46096200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:46086600-46088000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:46086800-46087600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:46086800-46088000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:46087000-46088400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:46087000-46088400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:46087200-46087600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:46087200-46087600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:46087200-46088200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:46087400-46095400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:46087400-46095600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:46087400-46097000	Weak transcription	Aorta	Aorta

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