Variant report

Variant	rs6902187
Chromosome Location	chr6:46080876-46080877
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1048079	1.00[CEU][hapmap];0.91[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1076736	1.00[CEU][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1076737	1.00[CEU][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10948280	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11754760	0.84[AFR][1000 genomes]
rs11756160	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11758852	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12196107	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12215921	0.85[AFR][1000 genomes]
rs12665453	1.00[CEU][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13210366	0.84[AFR][1000 genomes]
rs2006030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2022422	0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2022423	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2143746	0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2143747	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2179757	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2179760	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2206967	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2206968	0.84[AFR][1000 genomes]
rs2223777	0.87[AFR][1000 genomes]
rs2223778	0.87[AFR][1000 genomes]
rs2295016	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2295017	1.00[CEU][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2295018	1.00[CEU][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3756801	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3756802	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs3756803	0.87[AFR][1000 genomes]
rs3891763	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6458488	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6458489	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6458490	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs6458491	0.85[AFR][1000 genomes]
rs6458492	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6921870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940977	1.00[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6941587	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71566566	0.86[AFR][1000 genomes]
rs7356841	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7356846	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7357078	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7451713	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7740398	1.00[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7745824	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7760123	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7773230	0.84[AFR][1000 genomes]
rs7775082	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs8180644	0.87[AFR][1000 genomes]
rs872859	0.85[AFR][1000 genomes]
rs910179	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9349345	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs9357500	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9357502	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9367234	0.88[AFR][1000 genomes]
rs9369599	0.87[AFR][1000 genomes]
rs9369601	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9369602	0.81[EUR][1000 genomes]
rs9381421	0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9395155	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9395158	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs9463184	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9472684	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9472688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472689	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9472690	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9472692	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9472698	0.85[AFR][1000 genomes]
rs9472699	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472705	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472714	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9763	1.00[CEU][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs995564	1.00[YRI][hapmap];0.87[AFR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46071600-46086800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:46075800-46081200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:46075800-46081400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:46078200-46086800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:46078600-46086600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr6:46079000-46082600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:46080200-46095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:46080400-46085200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:46080600-46095400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:46080800-46081200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:46080800-46081200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:46080800-46081600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:46080800-46081600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:46080800-46081600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:46080800-46081800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:46080800-46081800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:46080800-46083000	Strong transcription	Primary T cells from cord blood	blood

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