Variant report

Variant	rs3756801
Chromosome Location	chr6:46095473-46095474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1048079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1076736	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1076737	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10948280	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11754760	0.84[AFR][1000 genomes]
rs11756160	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11758852	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12196107	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12215921	0.85[AFR][1000 genomes]
rs12665453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210366	0.84[AFR][1000 genomes]
rs2006030	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2022422	0.80[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2022423	0.83[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2143746	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2143747	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2179757	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2179760	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2206967	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206968	0.84[AFR][1000 genomes]
rs2223777	0.87[AFR][1000 genomes]
rs2223778	0.87[AFR][1000 genomes]
rs2295016	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2295017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2295018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3756802	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs3756803	0.87[AFR][1000 genomes]
rs3891763	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6458488	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6458489	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6458490	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs6458491	0.85[AFR][1000 genomes]
rs6458492	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6902187	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6921870	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6940977	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6941587	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71566566	0.86[AFR][1000 genomes]
rs7356841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7356846	0.94[CHB][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7357078	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7451713	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7740398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7745824	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7760123	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7773230	0.84[AFR][1000 genomes]
rs7775082	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs8180644	0.87[AFR][1000 genomes]
rs872859	0.85[AFR][1000 genomes]
rs910179	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9349345	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9357500	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9357502	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9367234	0.88[AFR][1000 genomes]
rs9369599	0.87[AFR][1000 genomes]
rs9369601	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9369602	0.81[EUR][1000 genomes]
rs9381421	0.80[CEU][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9395155	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9395158	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs9463184	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472684	0.83[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472688	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9472689	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9472690	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9472692	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472698	0.85[AFR][1000 genomes]
rs9472699	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472705	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472714	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs995564	1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022912	chr6:46093409-46116449	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46080200-46095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:46081600-46096400	Weak transcription	Thymus	Thymus
3	chr6:46083000-46096200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:46087400-46095600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:46087400-46097000	Weak transcription	Aorta	Aorta
6	chr6:46088400-46095600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:46088400-46095600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:46093400-46096400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:46094000-46095800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:46094200-46096800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:46094400-46096800	Enhancers	Primary B cells from cord blood	blood
12	chr6:46094600-46095600	Weak transcription	Stomach Mucosa	stomach
13	chr6:46094800-46095600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:46094800-46096800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:46095000-46097000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:46095200-46096400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:46095200-46097000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:46095400-46095600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:46095400-46095600	Enhancers	GM12878-XiMat	blood
20	chr6:46095400-46095800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:46095400-46096000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr6:46095400-46096000	Enhancers	Dnd41	blood
23	chr6:46095400-46096200	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:46095400-46096200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:46095400-46096200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:46095400-46096400	Enhancers	Psoas Muscle	Psoas
27	chr6:46095400-46096600	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:46095400-46096600	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr6:46095400-46096800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr6:46095400-46097000	Enhancers	Primary B cells from peripheral blood	blood
31	chr6:46095400-46097000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:46095400-46097000	Enhancers	Brain Substantia Nigra	brain
33	chr6:46095400-46097000	Enhancers	Monocytes-CD14+_RO01746	blood

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