Variant report

Variant	rs7749359
Chromosome Location	chr6:167070792-167070793
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10484525	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12174679	0.87[YRI][hapmap];0.87[AMR][1000 genomes]
rs12333059	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1984412	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1984413	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62438671	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6456099	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6915668	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915670	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6941412	0.87[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes]
rs7741396	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7744910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7755114	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7756763	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9295357	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9295358	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9347141	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9347142	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9348162	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348164	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9356502	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9356506	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9366037	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9457192	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9459708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs963302	0.86[CEU][hapmap];0.86[JPT][hapmap];0.97[YRI][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1020888	chr6:167059455-167136562	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv538540	chr6:167059455-167136562	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2754464	chr6:167059528-167130749	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167061800-167071000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:167061800-167071800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:167064200-167079000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:167068200-167073600	Weak transcription	Fetal Heart	heart
5	chr6:167068800-167070800	Enhancers	Gastric	stomach
6	chr6:167068800-167070800	Bivalent Enhancer	Stomach Mucosa	stomach
7	chr6:167068800-167071200	Enhancers	Pancreas	Pancrea
8	chr6:167069000-167077200	Weak transcription	Right Atrium	heart
9	chr6:167069200-167070800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:167069200-167073200	Enhancers	Spleen	Spleen
11	chr6:167069400-167070800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:167069400-167070800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:167069400-167070800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:167069400-167070800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr6:167069400-167071200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:167069400-167071200	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr6:167069600-167070800	Active TSS	H9 Cell Line	embryonic stem cell
18	chr6:167069600-167070800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
19	chr6:167069600-167070800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
20	chr6:167069600-167070800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:167069600-167070800	Bivalent Enhancer	Fetal Brain Male	brain
22	chr6:167069800-167070800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr6:167069800-167070800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr6:167069800-167070800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:167069800-167070800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:167069800-167070800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:167069800-167071000	Bivalent Enhancer	GM12878-XiMat	blood
28	chr6:167070000-167070800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
29	chr6:167070000-167070800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr6:167070000-167070800	Bivalent Enhancer	Fetal Intestine Small	intestine
31	chr6:167070000-167070800	Bivalent Enhancer	Fetal Muscle Leg	muscle
32	chr6:167070000-167070800	Bivalent Enhancer	Fetal Thymus	thymus
33	chr6:167070000-167071000	Flanking Active TSS	Ovary	ovary
34	chr6:167070200-167070800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:167070200-167070800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:167070200-167070800	Enhancers	Liver	Liver
37	chr6:167070200-167071000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
38	chr6:167070200-167071000	Bivalent Enhancer	Fetal Lung	lung
39	chr6:167070200-167071200	Flanking Active TSS	Primary B cells from cord blood	blood
40	chr6:167070200-167071200	Bivalent Enhancer	HepG2	liver
41	chr6:167070400-167070800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:167070400-167070800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:167070400-167070800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
44	chr6:167070400-167070800	Bivalent Enhancer	Adipose Nuclei	Adipose
45	chr6:167070400-167070800	Bivalent Enhancer	Fetal Intestine Large	intestine
46	chr6:167070400-167070800	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
47	chr6:167070400-167071000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
48	chr6:167070400-167071000	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr6:167070400-167071000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:167070400-167071200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood

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