Variant report

Variant	rs963302
Chromosome Location	chr6:167052048-167052049
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:167050618..167053160-chr6:167077513..167080245,2	K562	blood:
2	chr6:167044666..167049346-chr6:167050228..167055763,8	K562	blood:
3	chr6:167042473..167044859-chr6:167051026..167053525,2	MCF-7	breast:
4	chr6:167045626..167049988-chr6:167051387..167056754,6	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10484525	0.85[CEU][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12174679	0.82[CEU][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12333059	0.86[CEU][hapmap];0.86[JPT][hapmap];0.97[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16899265	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1984412	0.86[CEU][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1984413	0.85[CEU][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3829842	0.82[EUR][1000 genomes]
rs4145431	0.82[EUR][1000 genomes]
rs62438671	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6456099	0.91[CEU][hapmap];0.91[JPT][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6915668	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6915670	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6941412	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7741396	0.85[CEU][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7744910	0.86[CEU][hapmap];0.86[JPT][hapmap];0.97[YRI][hapmap];0.95[AMR][1000 genomes]
rs7749359	0.86[CEU][hapmap];0.86[JPT][hapmap];0.97[YRI][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7755114	0.85[CEU][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7756763	0.91[CEU][hapmap];0.91[JPT][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9295357	0.90[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9295358	0.82[CEU][hapmap];0.91[JPT][hapmap];0.97[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9347141	0.81[CEU][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9347142	0.86[CEU][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9348156	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9348162	0.85[CEU][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9348164	0.85[CEU][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9356502	0.80[CEU][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9356506	0.86[CEU][hapmap]
rs9366037	0.85[CEU][hapmap]
rs9457192	0.80[CEU][hapmap];0.82[AMR][1000 genomes]
rs9459708	0.86[CEU][hapmap];0.91[JPT][hapmap];0.97[YRI][hapmap];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023649	chr6:167026469-167060732	Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167043400-167058200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:167045000-167061200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:167046600-167054600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:167047600-167061200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:167048600-167052200	Enhancers	Spleen	Spleen
6	chr6:167048800-167054000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:167049400-167052400	Enhancers	Fetal Heart	heart
8	chr6:167050600-167052800	Weak transcription	HUVEC	blood vessel
9	chr6:167050600-167053600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:167050800-167053800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:167050800-167054200	Weak transcription	Gastric	stomach
12	chr6:167051000-167053000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:167051000-167053800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:167051000-167054000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:167051000-167054200	Weak transcription	Esophagus	oesophagus
16	chr6:167051200-167052600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
17	chr6:167051200-167054000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:167051200-167054000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:167051400-167052400	Enhancers	Primary B cells from cord blood	blood
20	chr6:167051400-167053800	Weak transcription	Right Atrium	heart
21	chr6:167051400-167054000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:167051400-167054200	Weak transcription	Lung	lung
23	chr6:167051600-167052800	Weak transcription	Left Ventricle	heart
24	chr6:167051600-167053000	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:167051600-167053800	Weak transcription	Right Ventricle	heart

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