Variant report

Variant	rs9356506
Chromosome Location	chr6:167069339-167069340
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10484525	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12333059	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1984412	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1984413	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs62438669	0.84[AMR][1000 genomes]
rs62438671	0.88[EUR][1000 genomes]
rs6456099	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs6915668	0.88[EUR][1000 genomes]
rs6915670	0.88[EUR][1000 genomes]
rs7741396	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7744910	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7749359	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7755114	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7756763	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs9295357	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs9295358	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs9347141	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs9347142	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9348162	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9348164	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9356502	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs9364862	0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs9366037	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9457192	0.95[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9459708	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs963302	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1020888	chr6:167059455-167136562	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv538540	chr6:167059455-167136562	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2754464	chr6:167059528-167130749	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167057800-167069400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:167061800-167069800	Weak transcription	Esophagus	oesophagus
3	chr6:167061800-167071000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:167061800-167071800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:167064200-167069400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:167064200-167069600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:167064200-167079000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:167068200-167070200	Enhancers	Brain Germinal Matrix	brain
9	chr6:167068200-167073600	Weak transcription	Fetal Heart	heart
10	chr6:167068800-167069400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:167068800-167069600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr6:167068800-167069600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:167068800-167070800	Enhancers	Gastric	stomach
14	chr6:167068800-167070800	Bivalent Enhancer	Stomach Mucosa	stomach
15	chr6:167068800-167071200	Enhancers	Pancreas	Pancrea
16	chr6:167069000-167069400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:167069000-167077200	Weak transcription	Right Atrium	heart
18	chr6:167069200-167069400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
19	chr6:167069200-167069400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
20	chr6:167069200-167069400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
21	chr6:167069200-167069400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:167069200-167069400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
23	chr6:167069200-167069600	Bivalent Enhancer	Primary B cells from cord blood	blood
24	chr6:167069200-167069600	Bivalent Enhancer	Fetal Brain Female	brain
25	chr6:167069200-167070200	Enhancers	Primary B cells from peripheral blood	blood
26	chr6:167069200-167070800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr6:167069200-167073200	Enhancers	Spleen	Spleen

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