Variant report

Variant	rs7750387
Chromosome Location	chr6:107121306-107121307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17067829	1.00[AFR][1000 genomes]
rs17506892	0.92[EUR][1000 genomes]
rs17565194	0.83[EUR][1000 genomes]
rs1799693	1.00[AFR][1000 genomes]
rs36016898	0.90[EUR][1000 genomes]
rs3804344	0.90[EUR][1000 genomes]
rs57273146	0.92[EUR][1000 genomes]
rs58328278	0.92[EUR][1000 genomes]
rs60992370	0.87[EUR][1000 genomes]
rs66665063	0.92[EUR][1000 genomes]
rs66991204	0.92[EUR][1000 genomes]
rs67667413	0.87[EUR][1000 genomes]
rs6903818	0.92[EUR][1000 genomes]
rs6911321	0.92[EUR][1000 genomes]
rs6925169	0.92[EUR][1000 genomes]
rs72945076	0.83[EUR][1000 genomes]
rs72946518	0.92[EUR][1000 genomes]
rs72946522	0.92[EUR][1000 genomes]
rs72946537	0.92[EUR][1000 genomes]
rs73509819	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
2	chr6:107106600-107126200	Weak transcription	Psoas Muscle	Psoas
3	chr6:107111800-107122200	Weak transcription	A549	lung
4	chr6:107112000-107121800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:107112800-107124200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:107113800-107122200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:107114000-107125400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:107115400-107123000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:107116600-107124200	Weak transcription	Primary T cells from cord blood	blood
10	chr6:107116800-107124800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:107116800-107125000	Weak transcription	Primary B cells from cord blood	blood
12	chr6:107117600-107130800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:107121000-107125200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:107121000-107125200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:107121200-107125400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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