Variant report

Variant	rs6911321
Chromosome Location	chr6:107103479-107103480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107095658..107097842-chr6:107102032..107104797,2	MCF-7	breast:
2	chr6:107077055..107079267-chr6:107102941..107104490,2	K562	blood:

Variant related genes	Relation type
ENSG00000130348	Chromatin interaction
ENSG00000130347	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1613722	1.00[JPT][hapmap]
rs1616375	1.00[JPT][hapmap]
rs1676008	1.00[JPT][hapmap]
rs1676010	1.00[JPT][hapmap]
rs1676025	1.00[JPT][hapmap]
rs1676028	1.00[JPT][hapmap]
rs17067603	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs17506892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17565194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1770718	1.00[JPT][hapmap]
rs1770721	1.00[JPT][hapmap]
rs1770722	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs1770733	1.00[JPT][hapmap]
rs1799693	0.81[TSI][hapmap]
rs2247335	1.00[JPT][hapmap]
rs36016898	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs3804344	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946762	0.85[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap]
rs57273146	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58328278	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60992370	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66665063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66991204	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67667413	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902745	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6903818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945076	0.90[EUR][1000 genomes]
rs72946518	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946537	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509819	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750387	0.92[EUR][1000 genomes]
rs7771502	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9386565	0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107103800	Weak transcription	Fetal Brain Male	brain
2	chr6:107078600-107104200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:107078600-107106200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:107078600-107106600	Weak transcription	NH-A	brain
5	chr6:107078600-107110200	Weak transcription	NHLF	lung
6	chr6:107078600-107110800	Weak transcription	Fetal Heart	heart
7	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
9	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:107086400-107104400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:107087400-107106200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:107087800-107104000	Strong transcription	Dnd41	blood
15	chr6:107088000-107104000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:107088000-107106000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:107088000-107108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:107088200-107106200	Weak transcription	Small Intestine	intestine
19	chr6:107089000-107104600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr6:107089000-107105800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr6:107090000-107109000	Strong transcription	Liver	Liver
22	chr6:107090800-107108000	Weak transcription	Pancreas	Pancrea
23	chr6:107091000-107104000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:107091400-107111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr6:107092000-107104400	Weak transcription	Esophagus	oesophagus
26	chr6:107092000-107106200	Weak transcription	Psoas Muscle	Psoas
27	chr6:107092200-107107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:107092400-107104000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:107092600-107104400	Weak transcription	Spleen	Spleen
30	chr6:107092800-107116400	Weak transcription	Brain Substantia Nigra	brain
31	chr6:107094000-107103600	Weak transcription	Colonic Mucosa	Colon
32	chr6:107094000-107106200	Weak transcription	HSMMtube	muscle
33	chr6:107094200-107106000	Weak transcription	NHDF-Ad	bronchial
34	chr6:107094600-107106200	Weak transcription	NHEK	skin
35	chr6:107095400-107104000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:107096000-107105200	Strong transcription	Adipose Nuclei	Adipose
37	chr6:107096000-107106000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:107096000-107106000	Strong transcription	Placenta	Placenta
39	chr6:107096200-107104800	Strong transcription	Duodenum Mucosa	Duodenum
40	chr6:107096200-107105800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:107096400-107104800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:107096400-107104800	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr6:107096400-107105200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:107096400-107106000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:107096400-107106200	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:107096400-107109000	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr6:107096600-107104000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:107096600-107104800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:107096600-107104800	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:107096600-107106400	Strong transcription	Rectal Mucosa Donor 29	rectum

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