Variant report

Variant	rs7771502
Chromosome Location	chr6:107034701-107034702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1613722	0.96[ASN][1000 genomes]
rs1616375	0.96[ASN][1000 genomes]
rs1676008	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1676010	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1676023	0.82[ASN][1000 genomes]
rs1676024	0.89[ASN][1000 genomes]
rs1676025	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1676028	0.96[ASN][1000 genomes]
rs17506892	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17565194	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1770718	0.89[ASN][1000 genomes]
rs1770719	0.89[ASN][1000 genomes]
rs1770721	0.89[ASN][1000 genomes]
rs1770722	0.93[ASN][1000 genomes]
rs1770723	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1770733	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1799693	0.83[EUR][1000 genomes]
rs2066201	0.89[ASN][1000 genomes]
rs2247335	0.89[ASN][1000 genomes]
rs2615209	0.96[ASN][1000 genomes]
rs36016898	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3747789	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804344	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4946762	0.92[EUR][1000 genomes]
rs56257618	0.83[AMR][1000 genomes]
rs57273146	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58328278	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60992370	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66665063	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66991204	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67667413	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6902745	0.96[ASN][1000 genomes]
rs6903818	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6911321	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6925169	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72945076	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72946518	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72946522	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72946537	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73509819	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs783395	0.81[AMR][1000 genomes]
rs783401	0.81[AMR][1000 genomes]
rs783416	0.81[AMR][1000 genomes]
rs9386565	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9486400	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106996400-107074000	Weak transcription	Fetal Kidney	kidney
2	chr6:107010200-107064600	Weak transcription	A549	lung
3	chr6:107014400-107038800	Weak transcription	Fetal Brain Female	brain
4	chr6:107016200-107039400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:107017800-107041000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:107018000-107052600	Weak transcription	Colonic Mucosa	Colon
7	chr6:107018400-107066400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:107018400-107076400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:107018600-107039000	Weak transcription	Placenta	Placenta
10	chr6:107018800-107039400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:107018800-107076200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:107019000-107076200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:107019200-107034800	Weak transcription	GM12878-XiMat	blood
14	chr6:107019400-107035200	Weak transcription	Fetal Lung	lung
15	chr6:107019800-107076400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:107020200-107037600	Weak transcription	Fetal Heart	heart
17	chr6:107022000-107076400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:107023200-107038200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:107023200-107038600	Weak transcription	Brain Germinal Matrix	brain
20	chr6:107023400-107038200	Weak transcription	HSMM	muscle
21	chr6:107023400-107038600	Weak transcription	NH-A	brain
22	chr6:107023400-107039000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:107023400-107039600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:107023400-107050200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:107023400-107068800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:107023400-107076600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:107023600-107038800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:107024200-107035200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:107026200-107035000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:107026400-107038800	Weak transcription	Brain Anterior Caudate	brain
31	chr6:107027600-107038600	Weak transcription	NHDF-Ad	bronchial
32	chr6:107028600-107036400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr6:107029200-107036000	Strong transcription	Duodenum Mucosa	Duodenum
34	chr6:107029200-107036200	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr6:107029200-107036400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr6:107029400-107035800	Strong transcription	Primary B cells from cord blood	blood
37	chr6:107029400-107036000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:107029400-107036400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:107029600-107052600	Weak transcription	Pancreas	Pancrea
40	chr6:107029800-107038600	Weak transcription	HSMMtube	muscle
41	chr6:107030200-107035800	Strong transcription	Left Ventricle	heart
42	chr6:107030600-107038600	Weak transcription	Fetal Thymus	thymus
43	chr6:107030800-107036000	Strong transcription	Stomach Smooth Muscle	stomach
44	chr6:107030800-107076800	Weak transcription	Small Intestine	intestine
45	chr6:107031000-107038800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:107031200-107034800	Weak transcription	Fetal Intestine Large	intestine
47	chr6:107031200-107035000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr6:107031200-107035200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:107031200-107037800	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:107031200-107038600	Weak transcription	H9 Cell Line	embryonic stem cell

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