Variant report

Variant	rs57273146
Chromosome Location	chr6:107106075-107106076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107106063..107107710-chr6:107116693..107119239,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17067603	0.93[ASN][1000 genomes]
rs17506892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17565194	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36016898	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804344	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58328278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60992370	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66665063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66991204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67667413	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911321	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945076	0.90[EUR][1000 genomes]
rs72946518	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946537	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750387	0.92[EUR][1000 genomes]
rs7771502	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv516902	chr6:107104374-107115394	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107106200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:107078600-107106600	Weak transcription	NH-A	brain
3	chr6:107078600-107110200	Weak transcription	NHLF	lung
4	chr6:107078600-107110800	Weak transcription	Fetal Heart	heart
5	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
7	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:107087400-107106200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:107088000-107108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:107088200-107106200	Weak transcription	Small Intestine	intestine
13	chr6:107090000-107109000	Strong transcription	Liver	Liver
14	chr6:107090800-107108000	Weak transcription	Pancreas	Pancrea
15	chr6:107091400-107111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr6:107092000-107106200	Weak transcription	Psoas Muscle	Psoas
17	chr6:107092200-107107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:107092800-107116400	Weak transcription	Brain Substantia Nigra	brain
19	chr6:107094000-107106200	Weak transcription	HSMMtube	muscle
20	chr6:107094600-107106200	Weak transcription	NHEK	skin
21	chr6:107096400-107106200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:107096400-107109000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr6:107096600-107106400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr6:107098200-107106200	Strong transcription	Fetal Thymus	thymus
25	chr6:107098600-107106800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:107098800-107106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:107099000-107106200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:107099200-107110200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:107099400-107106400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:107100000-107106200	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr6:107100000-107106200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:107100000-107106200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:107100000-107106200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:107100000-107106200	Strong transcription	Fetal Muscle Leg	muscle
35	chr6:107100000-107106400	Strong transcription	Primary T cells from cord blood	blood
36	chr6:107100000-107106600	Strong transcription	Fetal Muscle Trunk	muscle
37	chr6:107100000-107108800	Strong transcription	Left Ventricle	heart
38	chr6:107100200-107106800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:107100200-107107000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:107100200-107108200	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:107100200-107108400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:107100200-107109200	Strong transcription	Thymus	Thymus
43	chr6:107100200-107111800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:107100600-107109000	Strong transcription	Stomach Smooth Muscle	stomach
45	chr6:107100800-107107400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:107100800-107108000	Strong transcription	Fetal Kidney	kidney
47	chr6:107101400-107106200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr6:107101400-107111000	Weak transcription	HUVEC	blood vessel
49	chr6:107101600-107111200	Weak transcription	Right Ventricle	heart
50	chr6:107103000-107109600	Strong transcription	Skeletal Muscle Male	skeletal muscle

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