Variant report

Variant	rs7752739
Chromosome Location	chr6:149823794-149823795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149821833..149823936-chr6:149826832..149829564,2	K562	blood:
2	chr6:149383326..149385978-chr6:149822230..149824541,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs4532466	1.00[AMR][1000 genomes]
rs56967936	1.00[AMR][1000 genomes]
rs57123631	1.00[AMR][1000 genomes]
rs58874827	1.00[AMR][1000 genomes]
rs59048379	1.00[AMR][1000 genomes]
rs59658481	1.00[AMR][1000 genomes]
rs60423891	1.00[AMR][1000 genomes]
rs61531695	1.00[AMR][1000 genomes]
rs6932420	1.00[AMR][1000 genomes]
rs6935507	1.00[AMR][1000 genomes]
rs73781223	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742138	1.00[AMR][1000 genomes]
rs7752275	1.00[AMR][1000 genomes]
rs7752688	1.00[AMR][1000 genomes]
rs9688377	1.00[AMR][1000 genomes]
rs9766169	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv1832313	chr6:149789511-149840750	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149804400-149824600	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:149806400-149832000	Weak transcription	HSMMtube	muscle
3	chr6:149806400-149844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:149806800-149825200	Weak transcription	HSMM	muscle
5	chr6:149806800-149832400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:149807000-149832200	Weak transcription	Lung	lung
7	chr6:149807000-149849000	Weak transcription	Gastric	stomach
8	chr6:149807200-149824800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:149807200-149832000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:149807200-149835000	Weak transcription	Spleen	Spleen
11	chr6:149807200-149842600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:149810800-149851600	Weak transcription	Esophagus	oesophagus
13	chr6:149811200-149860600	Weak transcription	Aorta	Aorta
14	chr6:149811400-149826600	Weak transcription	Fetal Intestine Small	intestine
15	chr6:149814800-149825200	Weak transcription	Fetal Thymus	thymus
16	chr6:149815200-149825600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:149815600-149824800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:149815600-149845000	Weak transcription	Small Intestine	intestine
19	chr6:149816600-149825200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:149817000-149830800	Weak transcription	Brain Angular Gyrus	brain
21	chr6:149817800-149829000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:149818000-149825400	Weak transcription	NHDF-Ad	bronchial
23	chr6:149818200-149824600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr6:149818200-149830400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:149818400-149825600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:149818400-149826400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:149818400-149843800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:149818600-149826600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:149818800-149828200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:149818800-149845000	Weak transcription	A549	lung
31	chr6:149819000-149827200	Weak transcription	GM12878-XiMat	blood
32	chr6:149819200-149832000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:149819400-149825400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr6:149819400-149825600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:149819400-149828800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr6:149819800-149825400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:149819800-149828200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:149820000-149824600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:149820000-149825400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:149820000-149826600	Weak transcription	Fetal Intestine Large	intestine
41	chr6:149820200-149824400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr6:149820200-149825600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:149820400-149824400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:149820400-149825400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:149820400-149828800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr6:149820400-149831000	Weak transcription	Ovary	ovary
47	chr6:149820400-149831600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:149820400-149832000	Weak transcription	Fetal Heart	heart
49	chr6:149820400-149837400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:149820400-149840800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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