Variant report

Variant	rs9688377
Chromosome Location	chr6:149907124-149907125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4532466	1.00[AMR][1000 genomes]
rs56967936	1.00[AMR][1000 genomes]
rs57123631	1.00[AMR][1000 genomes]
rs58874827	1.00[AMR][1000 genomes]
rs59048379	1.00[AMR][1000 genomes]
rs59658481	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60423891	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61531695	1.00[AMR][1000 genomes]
rs6899802	1.00[YRI][hapmap]
rs6900736	0.94[AFR][1000 genomes]
rs6932420	1.00[AMR][1000 genomes]
rs6935507	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781223	1.00[AMR][1000 genomes]
rs7742138	1.00[AMR][1000 genomes]
rs7752275	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7752688	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7752739	1.00[AMR][1000 genomes]
rs9688880	1.00[AMR][1000 genomes]
rs9766169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9767281	1.00[AMR][1000 genomes]
rs9767608	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1791928	chr6:149903597-149913164	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1794633	chr6:149903597-149944908	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149888400-149911600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:149888600-149907600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:149888600-149909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:149888600-149912800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:149888600-149922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:149888800-149914800	Weak transcription	A549	lung
7	chr6:149889000-149908400	Weak transcription	Pancreas	Pancrea
8	chr6:149889000-149928000	Weak transcription	Stomach Mucosa	stomach
9	chr6:149889200-149919600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:149889400-149911800	Weak transcription	Psoas Muscle	Psoas
11	chr6:149889400-149924200	Weak transcription	Fetal Heart	heart
12	chr6:149889600-149914200	Weak transcription	Hela-S3	cervix
13	chr6:149889600-149931400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:149891200-149911200	Weak transcription	Small Intestine	intestine
15	chr6:149893800-149926600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:149894200-149920000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:149895600-149923200	Strong transcription	Dnd41	blood
18	chr6:149897200-149909400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:149897400-149909000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:149897600-149908000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:149898400-149919200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:149898600-149908400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:149898600-149908400	Weak transcription	Spleen	Spleen
24	chr6:149898600-149927400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:149898800-149907200	Weak transcription	Thymus	Thymus
26	chr6:149898800-149913800	Weak transcription	Right Ventricle	heart
27	chr6:149899200-149915000	Weak transcription	Esophagus	oesophagus
28	chr6:149899200-149929800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:149899400-149907400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:149900200-149926800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:149900400-149910000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr6:149900400-149923200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:149901000-149909800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:149901000-149910000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:149901000-149913200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:149901000-149919200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:149901000-149920200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:149901000-149923200	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr6:149901000-149923200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr6:149901200-149909800	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:149901200-149909800	Strong transcription	Adipose Nuclei	Adipose
42	chr6:149901200-149910000	Strong transcription	Liver	Liver
43	chr6:149901200-149920000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:149901400-149909400	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:149901400-149909600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:149901400-149910200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:149901600-149908400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr6:149901600-149909200	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr6:149901600-149919800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:149901800-149919400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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