Variant report

Variant	rs6932420
Chromosome Location	chr6:149788080-149788081
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149785728..149788361-chr6:149790642..149793612,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs237010	0.88[YRI][hapmap]
rs4532466	1.00[AMR][1000 genomes]
rs56967936	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57123631	1.00[AMR][1000 genomes]
rs58874827	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59048379	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59658481	1.00[AMR][1000 genomes]
rs60423891	1.00[AMR][1000 genomes]
rs61531695	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6935507	1.00[AMR][1000 genomes]
rs73781223	1.00[AMR][1000 genomes]
rs7742138	1.00[AMR][1000 genomes]
rs7752275	1.00[AMR][1000 genomes]
rs7752688	1.00[AMR][1000 genomes]
rs7752739	1.00[AMR][1000 genomes]
rs9688377	1.00[AMR][1000 genomes]
rs9766169	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149772000-149788800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:149776200-149789600	Weak transcription	Fetal Thymus	thymus
3	chr6:149776800-149802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:149780800-149793400	Weak transcription	Primary T cells from cord blood	blood
5	chr6:149781400-149788800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:149781400-149793800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:149782200-149802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:149783200-149802400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:149783400-149788400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:149783400-149789200	Genic enhancers	Primary B cells from peripheral blood	blood
11	chr6:149783800-149793400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr6:149784400-149789600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:149784600-149788200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:149785200-149792800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:149785600-149788400	Weak transcription	HepG2	liver
16	chr6:149785800-149788200	Enhancers	Primary B cells from cord blood	blood
17	chr6:149785800-149789600	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:149785800-149789600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:149785800-149793400	Weak transcription	Hela-S3	cervix
20	chr6:149785800-149794600	Weak transcription	Gastric	stomach
21	chr6:149785800-149794800	Weak transcription	Right Atrium	heart
22	chr6:149786000-149788200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:149786000-149788600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:149786000-149794200	Weak transcription	Colonic Mucosa	Colon
25	chr6:149786200-149788600	Weak transcription	Pancreas	Pancrea
26	chr6:149786200-149789400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:149786200-149793400	Weak transcription	Stomach Mucosa	stomach
28	chr6:149786400-149789600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:149787000-149790000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr6:149787200-149789400	Enhancers	Spleen	Spleen
31	chr6:149787400-149788200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:149787400-149788200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr6:149787400-149788200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:149787400-149788200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:149787400-149788200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:149787400-149789400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:149787400-149789600	Weak transcription	Fetal Intestine Small	intestine
38	chr6:149787400-149790800	Weak transcription	Lung	lung
39	chr6:149787600-149788200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:149787600-149788600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr6:149787600-149788600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:149787600-149788800	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr6:149787800-149788200	Enhancers	GM12878-XiMat	blood
44	chr6:149787800-149789000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr6:149788000-149788400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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