Variant report

Variant	rs237010
Chromosome Location	chr6:149758750-149758751
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149757368..149759713-chr6:149765073..149766703,2	K562	blood:
2	chr6:149352642..149354997-chr6:149758061..149760104,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11155641	0.84[CEU][hapmap]
rs11155644	0.80[EUR][1000 genomes]
rs11964335	0.92[CEU][hapmap]
rs13219868	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs1626823	0.80[EUR][1000 genomes]
rs1900300	0.85[CEU][hapmap]
rs237003	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs237005	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs237009	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237012	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs237016	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs237018	0.92[EUR][1000 genomes]
rs237019	0.86[EUR][1000 genomes]
rs237025	0.88[CEU][hapmap]
rs237026	0.89[CEU][hapmap]
rs237028	0.88[CEU][hapmap]
rs237035	0.88[CEU][hapmap]
rs366905	0.93[EUR][1000 genomes]
rs372205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs372238	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs384334	0.86[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs394563	0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs399673	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs409099	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs409111	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs412894	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs415434	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs420099	0.86[ASN][1000 genomes]
rs420430	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs421453	0.93[JPT][hapmap]
rs438852	0.85[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs444784	0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs447025	0.82[ASN][1000 genomes]
rs448420	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs448874	0.83[ASN][1000 genomes]
rs480870	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4895787	0.88[CEU][hapmap]
rs548848	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs584916	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6570963	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs6570964	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs6906384	0.81[EUR][1000 genomes]
rs6922130	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs6932420	0.88[YRI][hapmap]
rs6942381	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs7752555	0.81[EUR][1000 genomes]
rs7753269	0.81[EUR][1000 genomes]
rs805026	0.89[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149746800-149762000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:149749800-149764400	Weak transcription	Right Atrium	heart
3	chr6:149753400-149762200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:149753400-149762800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:149753400-149770000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:149753600-149762200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:149753600-149768400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:149753600-149769600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:149754400-149761800	Weak transcription	Fetal Thymus	thymus
10	chr6:149757000-149761800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:149758600-149758800	Enhancers	GM12878-XiMat	blood

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