Variant report

Variant	rs6906384
Chromosome Location	chr6:149664540-149664541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149659981..149662112-chr6:149664199..149665904,2	MCF-7	breast:
2	chr6:149636797..149639661-chr6:149663144..149666590,3	K562	blood:
3	chr6:149636797..149641190-chr6:149663953..149668102,4	K562	blood:

Variant related genes	Relation type
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11155641	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11155644	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964335	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219868	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1626823	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1900300	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs237003	0.81[EUR][1000 genomes]
rs237009	0.81[EUR][1000 genomes]
rs237010	0.81[EUR][1000 genomes]
rs237012	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs237016	0.85[ASN][1000 genomes]
rs237018	0.85[ASN][1000 genomes]
rs237019	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs237024	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs237025	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs237026	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs237028	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs237029	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs237034	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs237035	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs366905	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4895787	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570963	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570964	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922130	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942381	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752555	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753269	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805026	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149641200-149681400	Weak transcription	Fetal Stomach	stomach
2	chr6:149645000-149666400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:149649400-149689400	Weak transcription	Fetal Brain Female	brain
4	chr6:149654000-149674200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:149654600-149668600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:149656200-149670800	Weak transcription	Esophagus	oesophagus
7	chr6:149656800-149681400	Weak transcription	Psoas Muscle	Psoas
8	chr6:149656800-149682400	Weak transcription	Lung	lung
9	chr6:149656800-149694400	Weak transcription	Placenta	Placenta
10	chr6:149657400-149665800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:149657800-149673800	Weak transcription	Thymus	Thymus
12	chr6:149657800-149683800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:149657800-149691200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:149658000-149673800	Weak transcription	Fetal Intestine Large	intestine
15	chr6:149658000-149673800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:149658000-149674000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:149658000-149679000	Weak transcription	K562	blood
18	chr6:149658000-149680800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:149658000-149681400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:149658000-149695400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:149658200-149664800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:149658200-149691000	Weak transcription	NHDF-Ad	bronchial
23	chr6:149658800-149666400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:149658800-149674000	Weak transcription	HepG2	liver
25	chr6:149658800-149692400	Weak transcription	Fetal Kidney	kidney
26	chr6:149659000-149664800	Weak transcription	HUVEC	blood vessel
27	chr6:149659200-149685200	Weak transcription	Ovary	ovary
28	chr6:149659200-149691400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:149659400-149679000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:149659600-149679200	Weak transcription	NH-A	brain
31	chr6:149659600-149684200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:149660200-149667000	Weak transcription	Stomach Mucosa	stomach
33	chr6:149660200-149669600	Weak transcription	Brain Angular Gyrus	brain
34	chr6:149660400-149669200	Weak transcription	Fetal Intestine Small	intestine
35	chr6:149660400-149682200	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:149660400-149682400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:149660400-149685600	Weak transcription	Pancreas	Pancrea
38	chr6:149660400-149699200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:149660800-149664800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr6:149660800-149666200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr6:149661000-149665600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:149661000-149669400	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr6:149661000-149674200	Weak transcription	Left Ventricle	heart
44	chr6:149661200-149665600	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr6:149661200-149666000	Enhancers	Primary T cells from cord blood	blood
46	chr6:149661200-149666000	Enhancers	Liver	Liver
47	chr6:149661800-149665200	Weak transcription	Brain Germinal Matrix	brain
48	chr6:149661800-149665800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:149661800-149666600	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr6:149662200-149694800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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