Variant report

Variant	rs6570964
Chromosome Location	chr6:149691859-149691860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149687354..149691284-chr6:149691727..149695160,5	K562	blood:
2	chr6:149691320..149693840-chr6:149697416..149698951,2	K562	blood:

Variant related genes	Relation type
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11155639	0.82[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs11155641	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11155644	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219868	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1446556	0.82[CEU][hapmap];0.93[CHB][hapmap]
rs1626823	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1900300	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs237009	0.80[EUR][1000 genomes]
rs237010	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs237012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs237016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs237018	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs237019	0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs237024	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs237025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs237026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs237028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs237029	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs237034	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs237035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs366905	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs372205	0.88[CEU][hapmap]
rs4895787	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906384	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922130	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942381	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752555	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753269	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149656800-149694400	Weak transcription	Placenta	Placenta
2	chr6:149658000-149695400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:149658800-149692400	Weak transcription	Fetal Kidney	kidney
4	chr6:149660400-149699200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:149662200-149694800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:149664000-149694400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:149674600-149699200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:149674600-149699200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:149674600-149699200	Weak transcription	Fetal Intestine Large	intestine
10	chr6:149677400-149692400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:149677800-149699200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:149680000-149692400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:149680000-149699200	Weak transcription	Fetal Brain Male	brain
14	chr6:149681000-149694800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:149681200-149699200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:149681800-149695000	Weak transcription	Adipose Nuclei	Adipose
17	chr6:149681800-149699200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:149682600-149699200	Weak transcription	Esophagus	oesophagus
19	chr6:149682600-149699200	Weak transcription	Spleen	Spleen
20	chr6:149682600-149709200	Weak transcription	Psoas Muscle	Psoas
21	chr6:149682800-149692400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:149682800-149699200	Weak transcription	Lung	lung
23	chr6:149683400-149698800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:149683600-149692400	Weak transcription	NH-A	brain
25	chr6:149683600-149699400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:149684400-149698800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:149684600-149699200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:149685000-149694000	Weak transcription	NHEK	skin
29	chr6:149685200-149694800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:149685200-149699200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr6:149685200-149699400	Weak transcription	HMEC	breast
32	chr6:149685400-149692000	Weak transcription	Small Intestine	intestine
33	chr6:149685400-149692400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:149685600-149699200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:149685600-149699200	Weak transcription	Gastric	stomach
36	chr6:149685600-149699400	Weak transcription	Brain Angular Gyrus	brain
37	chr6:149685600-149699400	Weak transcription	Fetal Intestine Small	intestine
38	chr6:149685800-149692000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:149685800-149692000	Weak transcription	Pancreas	Pancrea
40	chr6:149685800-149692400	Weak transcription	Ovary	ovary
41	chr6:149685800-149699200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:149685800-149699200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:149685800-149699200	Weak transcription	Fetal Stomach	stomach
44	chr6:149685800-149699200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:149685800-149699600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:149686000-149692400	Weak transcription	HepG2	liver
47	chr6:149686000-149699200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:149686000-149709000	Weak transcription	Stomach Mucosa	stomach
49	chr6:149686200-149695000	Weak transcription	A549	lung
50	chr6:149686200-149699200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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