Variant report

Variant	rs237024
Chromosome Location	chr6:149721965-149721966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11155639	0.92[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs11155641	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155644	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11964335	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13219868	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1446556	0.92[CHB][hapmap]
rs1626823	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900300	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs237009	0.84[AFR][1000 genomes]
rs237012	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs237016	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs237018	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs237019	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs237025	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237026	0.86[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237028	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237029	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237034	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs237035	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366905	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs399673	0.84[AFR][1000 genomes]
rs412746	1.00[YRI][hapmap]
rs412894	0.84[AFR][1000 genomes]
rs415434	0.84[AFR][1000 genomes]
rs420430	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs438852	1.00[YRI][hapmap]
rs444784	1.00[YRI][hapmap]
rs448420	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs480870	0.84[AFR][1000 genomes]
rs4895787	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs548848	0.84[AFR][1000 genomes]
rs584916	1.00[YRI][hapmap]
rs6570963	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570964	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906384	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6922130	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6942381	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7752555	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7753269	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs805026	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv969455	chr6:149720845-149727255	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149687800-149726400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149700400-149728400	Weak transcription	Hela-S3	cervix
3	chr6:149700400-149732400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:149700600-149730800	Weak transcription	Fetal Brain Male	brain
5	chr6:149700800-149732800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:149701400-149730800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:149701400-149734200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:149701600-149733600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:149703400-149730600	Weak transcription	Brain Germinal Matrix	brain
10	chr6:149703600-149730400	Weak transcription	NHLF	lung
11	chr6:149705200-149734600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:149709400-149733000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:149709600-149729800	Weak transcription	Fetal Heart	heart
14	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:149711400-149726000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr6:149711400-149726600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:149712000-149727200	Strong transcription	Primary hematopoietic stem cells	blood
18	chr6:149713800-149735400	Weak transcription	Small Intestine	intestine
19	chr6:149714000-149728000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:149714800-149730800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:149715000-149728200	Strong transcription	Fetal Thymus	thymus
22	chr6:149715400-149732600	Strong transcription	Dnd41	blood
23	chr6:149715600-149733600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:149716000-149728000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:149716000-149728200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:149716400-149728600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:149716800-149725000	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:149717200-149726400	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:149717200-149726800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:149717400-149724200	Strong transcription	Primary B cells from peripheral blood	blood
31	chr6:149717400-149726200	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:149717400-149726200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:149717400-149726600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:149717400-149728200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:149717400-149728400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:149717400-149733200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:149717600-149722200	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr6:149717600-149723600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:149717600-149724600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:149717600-149727000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:149717600-149727600	Strong transcription	Primary B cells from cord blood	blood
42	chr6:149717800-149732200	Strong transcription	GM12878-XiMat	blood
43	chr6:149718000-149722000	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:149718000-149724000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:149718000-149724400	Strong transcription	Primary T cells from cord blood	blood
46	chr6:149718600-149722000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
47	chr6:149718600-149722200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr6:149718600-149722200	Strong transcription	Fetal Intestine Large	intestine
49	chr6:149718600-149722400	Strong transcription	Placenta	Placenta
50	chr6:149718600-149727200	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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