Variant report

Variant	rs366905
Chromosome Location	chr6:149735097-149735098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149451723..149453741-chr6:149733693..149735273,2	MCF-7	breast:
2	chr6:149733372..149735281-chr6:149738078..149740684,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11155639	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs11155641	0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11155644	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11964335	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12110411	0.83[YRI][hapmap]
rs13219868	0.83[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1446556	0.93[CHB][hapmap]
rs1626823	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1900300	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs237003	0.92[EUR][1000 genomes]
rs237009	0.93[EUR][1000 genomes]
rs237010	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs237012	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs237016	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237018	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237019	0.85[CHB][hapmap];0.82[JPT][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs237024	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs237025	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs237026	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs237028	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs237029	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs237035	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs372205	0.96[CEU][hapmap]
rs372238	0.89[EUR][1000 genomes]
rs409099	0.90[EUR][1000 genomes]
rs409111	0.90[EUR][1000 genomes]
rs415434	0.90[EUR][1000 genomes]
rs420430	0.86[CEU][hapmap]
rs444784	0.80[CEU][hapmap]
rs448420	0.86[CEU][hapmap]
rs4895787	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6570963	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6570964	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6906384	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6922130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6942381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7752555	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7753269	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs805026	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149713800-149735400	Weak transcription	Small Intestine	intestine
3	chr6:149721800-149743800	Weak transcription	Lung	lung
4	chr6:149721800-149744800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:149721800-149745200	Weak transcription	Pancreas	Pancrea
6	chr6:149722000-149745000	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:149725200-149744600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:149728200-149744600	Weak transcription	Fetal Intestine Small	intestine
9	chr6:149730200-149735600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:149730400-149735600	Strong transcription	Fetal Thymus	thymus
11	chr6:149730600-149744400	Weak transcription	NHDF-Ad	bronchial
12	chr6:149731400-149736600	Weak transcription	Fetal Stomach	stomach
13	chr6:149731400-149736800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:149731400-149738800	Weak transcription	A549	lung
15	chr6:149731400-149743800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:149731600-149736400	Weak transcription	Colonic Mucosa	Colon
17	chr6:149731600-149738800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:149731600-149744200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:149731600-149744400	Weak transcription	Brain Anterior Caudate	brain
20	chr6:149731600-149744600	Weak transcription	NHLF	lung
21	chr6:149731600-149745200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr6:149731600-149745200	Weak transcription	Left Ventricle	heart
23	chr6:149731600-149745200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:149731800-149744400	Weak transcription	Brain Substantia Nigra	brain
25	chr6:149731800-149744400	Weak transcription	HSMMtube	muscle
26	chr6:149731800-149745200	Weak transcription	Fetal Brain Female	brain
27	chr6:149732000-149735400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:149732000-149738400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:149732000-149744400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:149732000-149744600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:149732200-149735400	Weak transcription	K562	blood
32	chr6:149732200-149735600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:149732200-149736200	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:149732200-149736600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:149732200-149737200	Weak transcription	Thymus	Thymus
36	chr6:149732200-149738400	Weak transcription	Brain Angular Gyrus	brain
37	chr6:149732200-149744400	Weak transcription	Ovary	ovary
38	chr6:149732200-149744400	Weak transcription	Osteobl	bone
39	chr6:149732200-149745000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:149732400-149737200	Weak transcription	Primary B cells from cord blood	blood
41	chr6:149732400-149740800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:149732400-149744000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:149732400-149744400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:149732400-149744400	Weak transcription	Brain Hippocampus Middle	brain
45	chr6:149732400-149745200	Weak transcription	Brain Germinal Matrix	brain
46	chr6:149732600-149736400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:149732600-149736600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:149732600-149743800	Weak transcription	Placenta	Placenta
49	chr6:149732600-149744600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:149732600-149744600	Weak transcription	Fetal Lung	lung

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