Variant report

Variant	rs7752766
Chromosome Location	chr6:143142498-143142499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1040439	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs198646	0.82[CEU][hapmap];0.80[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs198657	0.81[JPT][hapmap]
rs2142939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493985	0.89[ASN][1000 genomes]
rs573352	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs592503	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7763660	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs926372	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376708	0.88[EUR][1000 genomes]
rs9376711	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1019558	chr6:143121577-143154554	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143123400-143144000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:143133000-143142800	Weak transcription	Lung	lung
3	chr6:143133400-143145600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:143139400-143143400	Enhancers	HepG2	liver
5	chr6:143139600-143143400	Enhancers	Small Intestine	intestine
6	chr6:143139800-143142800	Weak transcription	Esophagus	oesophagus
7	chr6:143140400-143152000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:143140800-143143400	Enhancers	Fetal Heart	heart
9	chr6:143140800-143152000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:143141200-143143000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:143141200-143143400	Enhancers	Fetal Intestine Small	intestine
12	chr6:143141200-143143800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:143141200-143144000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:143141200-143144000	Weak transcription	Placenta	Placenta
15	chr6:143141200-143145600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:143141400-143142600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:143141400-143142800	Weak transcription	Brain Angular Gyrus	brain
18	chr6:143141400-143143000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:143141400-143143000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:143141400-143143000	Weak transcription	Gastric	stomach
21	chr6:143141400-143143200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:143141400-143143200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr6:143141400-143143400	Enhancers	Fetal Stomach	stomach
24	chr6:143141400-143144200	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:143141400-143144200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr6:143141400-143144600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:143141400-143145000	Enhancers	Brain Hippocampus Middle	brain
28	chr6:143141400-143145000	Enhancers	Brain Substantia Nigra	brain
29	chr6:143141400-143145400	Enhancers	Fetal Lung	lung
30	chr6:143141400-143152000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:143141600-143142600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr6:143141600-143142800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:143141600-143142800	Weak transcription	Fetal Brain Female	brain
34	chr6:143141600-143142800	Enhancers	Fetal Intestine Large	intestine
35	chr6:143141600-143142800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr6:143141600-143143000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:143141600-143143000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr6:143141600-143143200	Enhancers	Stomach Smooth Muscle	stomach
39	chr6:143141600-143143400	Enhancers	Duodenum Mucosa	Duodenum
40	chr6:143141600-143143400	Enhancers	Fetal Kidney	kidney
41	chr6:143141600-143143400	Enhancers	Rectal Smooth Muscle	rectum
42	chr6:143141600-143143600	Enhancers	Primary T cells fromperipheralblood	blood
43	chr6:143141600-143144000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:143141600-143144000	Enhancers	Fetal Thymus	thymus
45	chr6:143141600-143144200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr6:143141600-143144600	Enhancers	Fetal Muscle Leg	muscle
47	chr6:143141600-143144800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:143141600-143144800	Enhancers	Brain Cingulate Gyrus	brain
49	chr6:143141600-143145000	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr6:143141600-143145000	Enhancers	Adipose Nuclei	Adipose

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