Variant report

Variant	rs7763660
Chromosome Location	chr6:143140653-143140654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143139378..143142104-chr6:143146552..143148594,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1040439	0.83[ASN][1000 genomes]
rs198646	0.81[CEU][hapmap];0.83[ASN][1000 genomes]
rs198657	0.81[JPT][hapmap]
rs2142939	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2328386	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2328387	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs493985	0.83[ASN][1000 genomes]
rs573352	0.83[ASN][1000 genomes]
rs592503	0.83[ASN][1000 genomes]
rs7752766	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs926372	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9376711	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1019558	chr6:143121577-143154554	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143096200-143140800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:143114200-143140800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:143117000-143140800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:143123400-143144000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:143124000-143140800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:143124400-143140800	Weak transcription	NHEK	skin
7	chr6:143125000-143141000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:143125200-143140800	Weak transcription	HMEC	breast
9	chr6:143126800-143140800	Weak transcription	Aorta	Aorta
10	chr6:143132400-143140800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:143133000-143142800	Weak transcription	Lung	lung
12	chr6:143133200-143140800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:143133200-143140800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:143133200-143140800	Weak transcription	Ovary	ovary
15	chr6:143133200-143142400	Weak transcription	Spleen	Spleen
16	chr6:143133400-143140800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:143133400-143140800	Weak transcription	NHLF	lung
18	chr6:143133400-143141000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:143133400-143141000	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:143133400-143145600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:143137600-143140800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:143137800-143140800	Weak transcription	Brain Angular Gyrus	brain
23	chr6:143137800-143140800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:143138000-143140800	Weak transcription	HSMMtube	muscle
25	chr6:143138000-143141000	Weak transcription	Fetal Stomach	stomach
26	chr6:143138200-143140800	Weak transcription	Fetal Heart	heart
27	chr6:143138200-143141000	Weak transcription	Psoas Muscle	Psoas
28	chr6:143138200-143142400	Weak transcription	Pancreas	Pancrea
29	chr6:143138400-143140800	Enhancers	Primary B cells from peripheral blood	blood
30	chr6:143138600-143140800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:143138800-143140800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:143138800-143140800	Enhancers	Fetal Thymus	thymus
33	chr6:143139400-143141400	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr6:143139400-143143400	Enhancers	HepG2	liver
35	chr6:143139600-143140800	Enhancers	Liver	Liver
36	chr6:143139600-143140800	Weak transcription	Thymus	Thymus
37	chr6:143139600-143143400	Enhancers	Small Intestine	intestine
38	chr6:143139800-143142800	Weak transcription	Esophagus	oesophagus
39	chr6:143140000-143140800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:143140200-143140800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:143140200-143140800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr6:143140400-143140800	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr6:143140400-143140800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr6:143140400-143140800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:143140400-143140800	Enhancers	Brain Anterior Caudate	brain
46	chr6:143140400-143140800	Weak transcription	Left Ventricle	heart
47	chr6:143140400-143140800	Enhancers	Rectal Smooth Muscle	rectum
48	chr6:143140400-143140800	Enhancers	A549	lung
49	chr6:143140400-143140800	Flanking Active TSS	GM12878-XiMat	blood
50	chr6:143140400-143141000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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