Variant report

Variant	rs7753672
Chromosome Location	chr6:33678004-33678005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33265365..33267205-chr6:33677898..33679962,2	K562	blood:
2	chr6:33677651..33679939-chr6:34111673..34114600,2	MCF-7	breast:
3	chr6:33676238..33679184-chr6:33722714..33724604,2	MCF-7	breast:
4	chr6:33588748..33590902-chr6:33677628..33680104,3	K562	blood:
5	chr6:33588748..33590595-chr6:33677611..33680104,2	K562	blood:
6	chr6:33395342..33398838-chr6:33677022..33679442,4	K562	blood:
7	chr6:33587667..33592228-chr6:33677016..33679936,5	MCF-7	breast:
8	chr6:33555432..33562879-chr6:33670455..33680174,12	K562	blood:
9	chr6:33677052..33678604-chr6:34122828..34124549,2	MCF-7	breast:
10	chr6:33677771..33685795-chr6:33753004..33758704,10	MCF-7	breast:
11	chr6:33554633..33558061-chr6:33675915..33678804,3	MCF-7	breast:
12	chr6:33660515..33666072-chr6:33673200..33680629,8	MCF-7	breast:
13	chr6:33586029..33588725-chr6:33677027..33679418,2	MCF-7	breast:
14	chr6:33677680..33679812-chr6:33755384..33758328,2	MCF-7	breast:
15	chr6:33551901..33555908-chr6:33676752..33679381,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction
ENSG00000096433	Chromatin interaction
ENSG00000197251	Chromatin interaction
ENSG00000237441	Chromatin interaction
ENSG00000269490	Chromatin interaction
ENSG00000266509	Chromatin interaction
ENSG00000124493	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1324966	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2229643	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941770	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs754405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753953	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759182	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33663000-33678200	Weak transcription	Fetal Kidney	kidney
2	chr6:33663800-33678600	Weak transcription	Small Intestine	intestine
3	chr6:33665200-33678200	Weak transcription	Brain Substantia Nigra	brain
4	chr6:33665200-33678600	Weak transcription	Aorta	Aorta
5	chr6:33665600-33678200	Weak transcription	NH-A	brain
6	chr6:33665600-33678400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:33666000-33678200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:33666600-33678200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:33666600-33678400	Weak transcription	Colonic Mucosa	Colon
10	chr6:33666600-33678400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:33667000-33678400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:33668600-33678200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:33668600-33678200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:33670800-33678200	Weak transcription	NHDF-Ad	bronchial
15	chr6:33673800-33678400	Strong transcription	Fetal Muscle Trunk	muscle
16	chr6:33674200-33678400	Strong transcription	H9 Cell Line	embryonic stem cell
17	chr6:33674400-33678200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:33674400-33678200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:33674400-33678200	Strong transcription	Fetal Intestine Small	intestine
20	chr6:33674600-33678200	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:33674600-33678200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:33674600-33678400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:33674800-33678400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:33675000-33678200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:33675000-33678200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:33675400-33678200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:33675400-33678200	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr6:33675400-33678200	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:33675400-33678200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:33675600-33678200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:33675600-33678200	Strong transcription	Spleen	Spleen
32	chr6:33675800-33678200	Strong transcription	Stomach Smooth Muscle	stomach
33	chr6:33675800-33678400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:33676000-33678200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:33676000-33678200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:33676000-33678200	Genic enhancers	HepG2	liver
37	chr6:33676000-33678600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr6:33676200-33678200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:33676200-33678200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:33676200-33678200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:33676200-33678200	Strong transcription	HSMM	muscle
42	chr6:33676600-33678200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:33676600-33678400	Genic enhancers	Fetal Muscle Leg	muscle
44	chr6:33676800-33678200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:33677000-33678200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:33677000-33678200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:33677000-33678200	Weak transcription	Liver	Liver
48	chr6:33677000-33678200	Weak transcription	Brain Angular Gyrus	brain
49	chr6:33677000-33678200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:33677000-33678200	Enhancers	Fetal Lung	lung

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