Variant report

Variant	rs7753953
Chromosome Location	chr6:33678428-33678429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33265365..33267205-chr6:33677898..33679962,2	K562	blood:
2	chr6:33677651..33679939-chr6:34111673..34114600,2	MCF-7	breast:
3	chr6:33676238..33679184-chr6:33722714..33724604,2	MCF-7	breast:
4	chr6:33264498..33266775-chr6:33678035..33680124,2	MCF-7	breast:
5	chr6:33588748..33590902-chr6:33677628..33680104,3	K562	blood:
6	chr6:33588748..33590595-chr6:33677611..33680104,2	K562	blood:
7	chr6:33678240..33679964-chr6:34113479..34115343,2	MCF-7	breast:
8	chr6:33395342..33398838-chr6:33677022..33679442,4	K562	blood:
9	chr6:33587667..33592228-chr6:33677016..33679936,5	MCF-7	breast:
10	chr6:33555432..33562879-chr6:33670455..33680174,12	K562	blood:
11	chr6:33677052..33678604-chr6:34122828..34124549,2	MCF-7	breast:
12	chr6:33677771..33685795-chr6:33753004..33758704,10	MCF-7	breast:
13	chr6:33554633..33558061-chr6:33675915..33678804,3	MCF-7	breast:
14	chr6:33660515..33666072-chr6:33673200..33680629,8	MCF-7	breast:
15	chr6:33586029..33588725-chr6:33677027..33679418,2	MCF-7	breast:
16	chr6:33677680..33679812-chr6:33755384..33758328,2	MCF-7	breast:
17	chr6:33551901..33555908-chr6:33676752..33679381,5	K562	blood:
18	chr6:33678349..33679133-chr9:86595164..86595750,2	Hela-S3	cervix:
19	chr6:33678014..33680671-chr6:33755515..33757218,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000237441	Chromatin interaction
ENSG00000096433	Chromatin interaction
ENSG00000266509	Chromatin interaction
ENSG00000165119	Chromatin interaction
ENSG00000124493	Chromatin interaction
ENSG00000197251	Chromatin interaction
ENSG00000161904	Chromatin interaction
ENSG00000178966	Chromatin interaction
ENSG00000269490	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1324966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2229643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296330	1.00[YRI][hapmap]
rs6923210	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6941770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6942038	0.86[AFR][1000 genomes]
rs754405	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753672	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759182	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33663800-33678600	Weak transcription	Small Intestine	intestine
2	chr6:33665200-33678600	Weak transcription	Aorta	Aorta
3	chr6:33676000-33678600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:33677000-33678600	Weak transcription	Ovary	ovary
5	chr6:33677200-33678600	Genic enhancers	Fetal Thymus	thymus
6	chr6:33677200-33678600	Enhancers	Left Ventricle	heart
7	chr6:33677400-33678600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:33677400-33678600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:33677400-33678600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr6:33677400-33678600	Genic enhancers	Placenta	Placenta
11	chr6:33677400-33678800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:33677400-33679200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr6:33677600-33678600	Genic enhancers	Gastric	stomach
14	chr6:33677600-33679000	Transcr. at gene 5' and 3'	NHEK	skin
15	chr6:33677600-33679200	Flanking Active TSS	Fetal Brain Male	brain
16	chr6:33677800-33678600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:33677800-33678600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:33677800-33678600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr6:33677800-33678600	Enhancers	Brain Germinal Matrix	brain
20	chr6:33677800-33678600	Enhancers	HSMMtube	muscle
21	chr6:33677800-33678800	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:33677800-33678800	Enhancers	Right Atrium	heart
23	chr6:33677800-33678800	Transcr. at gene 5' and 3'	Dnd41	blood
24	chr6:33677800-33679000	Flanking Active TSS	Fetal Brain Female	brain
25	chr6:33677800-33679000	Flanking Active TSS	GM12878-XiMat	blood
26	chr6:33677800-33679200	Flanking Active TSS	Fetal Heart	heart
27	chr6:33678000-33678600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:33678000-33678600	Genic enhancers	Fetal Stomach	stomach
29	chr6:33678000-33678600	Enhancers	Pancreas	Pancrea
30	chr6:33678000-33678800	Flanking Active TSS	Brain Anterior Caudate	brain
31	chr6:33678000-33678800	Transcr. at gene 5' and 3'	Hela-S3	cervix
32	chr6:33678000-33678800	Transcr. at gene 5' and 3'	K562	blood
33	chr6:33678200-33678600	Genic enhancers	H1 Cell Line	embryonic stem cell
34	chr6:33678200-33678600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:33678200-33678600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:33678200-33678600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:33678200-33678600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:33678200-33678600	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
39	chr6:33678200-33678600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:33678200-33678600	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
41	chr6:33678200-33678600	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
42	chr6:33678200-33678600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
43	chr6:33678200-33678600	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:33678200-33678600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:33678200-33678600	Enhancers	Primary hematopoietic stem cells	blood
46	chr6:33678200-33678600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:33678200-33678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:33678200-33678600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:33678200-33678600	Enhancers	Adipose Nuclei	Adipose
50	chr6:33678200-33678600	Enhancers	Liver	Liver

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