Variant report

Variant	rs7759182
Chromosome Location	chr6:33679239-33679240
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33265365..33267205-chr6:33677898..33679962,2	K562	blood:
2	chr15:75744060..75744813-chr6:33678935..33679655,2	Hela-S3	cervix:
3	chr6:33677651..33679939-chr6:34111673..34114600,2	MCF-7	breast:
4	chr6:33264498..33266775-chr6:33678035..33680124,2	MCF-7	breast:
5	chr6:33588748..33590902-chr6:33677628..33680104,3	K562	blood:
6	chr6:33588748..33590595-chr6:33677611..33680104,2	K562	blood:
7	chr6:33678240..33679964-chr6:34113479..34115343,2	MCF-7	breast:
8	chr6:33395342..33398838-chr6:33677022..33679442,4	K562	blood:
9	chr6:33587667..33592228-chr6:33677016..33679936,5	MCF-7	breast:
10	chr6:33555432..33562879-chr6:33670455..33680174,12	K562	blood:
11	chr6:33677771..33685795-chr6:33753004..33758704,10	MCF-7	breast:
12	chr6:33660515..33666072-chr6:33673200..33680629,8	MCF-7	breast:
13	chr6:33586029..33588725-chr6:33677027..33679418,2	MCF-7	breast:
14	chr10:98591909..98592710-chr6:33678934..33679670,2	Hela-S3	cervix:
15	chr6:33677680..33679812-chr6:33755384..33758328,2	MCF-7	breast:
16	chr6:33551901..33555908-chr6:33676752..33679381,5	K562	blood:
17	chr6:33678014..33680671-chr6:33755515..33757218,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000269490	Chromatin interaction
ENSG00000161904	Chromatin interaction
ENSG00000237441	Chromatin interaction
ENSG00000169375	Chromatin interaction
ENSG00000096433	Chromatin interaction
ENSG00000266509	Chromatin interaction
ENSG00000124493	Chromatin interaction
ENSG00000197251	Chromatin interaction
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1324966	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2229643	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941770	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs754405	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753672	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33678600-33679800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:33678600-33679800	Active TSS	Fetal Kidney	kidney
3	chr6:33678600-33679800	Active TSS	A549	lung
4	chr6:33678600-33680000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr6:33678600-33680000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr6:33678600-33680200	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr6:33678800-33679600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:33678800-33679600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:33678800-33679600	Active TSS	Sigmoid Colon	Sigmoid Colon
10	chr6:33678800-33679600	Active TSS	Stomach Mucosa	stomach
11	chr6:33678800-33679800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr6:33678800-33679800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:33678800-33679800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:33678800-33679800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:33678800-33679800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:33678800-33679800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:33678800-33679800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:33678800-33679800	Active TSS	Brain Anterior Caudate	brain
19	chr6:33678800-33679800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:33678800-33679800	Active TSS	Gastric	stomach
21	chr6:33678800-33679800	Active TSS	Ovary	ovary
22	chr6:33678800-33679800	Active TSS	Right Ventricle	heart
23	chr6:33678800-33679800	Active TSS	NHLF	lung
24	chr6:33678800-33680000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:33678800-33680000	Active TSS	Aorta	Aorta
26	chr6:33678800-33680000	Active TSS	Esophagus	oesophagus
27	chr6:33678800-33680000	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr6:33679000-33679600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:33679000-33679600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:33679000-33679600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:33679000-33679600	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr6:33679000-33679600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:33679000-33679600	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr6:33679000-33679600	Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr6:33679000-33679600	Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr6:33679000-33679600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:33679000-33679600	Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr6:33679000-33679600	Active TSS	Brain Cingulate Gyrus	brain
39	chr6:33679000-33679600	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr6:33679000-33679600	Active TSS	Duodenum Mucosa	Duodenum
41	chr6:33679000-33679600	Active TSS	Fetal Intestine Large	intestine
42	chr6:33679000-33679600	Active TSS	Fetal Intestine Small	intestine
43	chr6:33679000-33679600	Active TSS	Placenta Amnion	Placenta Amnion
44	chr6:33679000-33679600	Active TSS	Small Intestine	intestine
45	chr6:33679000-33679600	Active TSS	Spleen	Spleen
46	chr6:33679000-33679600	Active TSS	HMEC	breast
47	chr6:33679000-33679600	Active TSS	HSMM	muscle
48	chr6:33679000-33679600	Active TSS	K562	blood
49	chr6:33679000-33679600	Active TSS	NH-A	brain
50	chr6:33679000-33679600	Active TSS	NHEK	skin

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