Variant report

Variant	rs7754535
Chromosome Location	chr6:119941679-119941680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119936573..119939342-chr6:119940727..119942239,2	K562	blood:
2	chr6:119941629..119944103-chr6:119947152..119949648,3	MCF-7	breast:
3	chr6:119938254..119941760-chr6:119945161..119948947,3	K562	blood:
4	chr6:119913316..119915387-chr6:119941334..119943937,2	MCF-7	breast:
5	chr6:119941042..119943563-chr6:119947616..119949679,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10782195	0.92[EUR][1000 genomes]
rs11153840	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1572957	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1977147	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2024733	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2024734	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2794256	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4245503	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4946434	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs807299	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs807309	0.93[EUR][1000 genomes]
rs809889	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs813955	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9285433	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9320697	0.87[AFR][1000 genomes]
rs9320698	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9372544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374809	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9374810	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385080	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9398517	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119930600-119948000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:119933200-119942000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:119934200-119942400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:119934800-119942000	Weak transcription	Osteobl	bone
5	chr6:119935600-119942000	Weak transcription	NHLF	lung
6	chr6:119935800-119942200	Weak transcription	HSMM	muscle
7	chr6:119936000-119942400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:119936000-119943600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:119936200-119943800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:119939600-119942200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:119939800-119942000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:119940000-119942000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:119940200-119942000	Weak transcription	HSMMtube	muscle
14	chr6:119940400-119949800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:119940600-119944000	Enhancers	HMEC	breast
16	chr6:119940800-119942000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:119940800-119942200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:119941200-119942000	Enhancers	NHEK	skin
19	chr6:119941200-119943800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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