Variant report

Variant	rs9320698
Chromosome Location	chr6:119934968-119934969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119926625..119928908-chr6:119933015..119935117,2	K562	blood:
2	chr1:182573652..182574450-chr6:119934780..119935533,2	MCF-7	breast:
3	chr6:119930273..119931958-chr6:119933352..119935627,2	MCF-7	breast:
4	chr6:119932562..119937060-chr6:119938471..119941600,5	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10782195	0.91[EUR][1000 genomes]
rs11153840	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1572957	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1977147	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2024733	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2024734	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2794256	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4245503	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4946434	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7754535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs807299	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs807309	0.92[EUR][1000 genomes]
rs809889	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs813955	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9285433	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9320697	0.87[AFR][1000 genomes]
rs9372544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9374809	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374810	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385080	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9398517	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119930600-119935200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:119930600-119935200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:119930600-119948000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:119930800-119935400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:119930800-119935600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:119932200-119935600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:119932800-119935600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:119933200-119935400	Enhancers	NHDF-Ad	bronchial
9	chr6:119933200-119936000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:119933200-119936000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:119933200-119942000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:119933400-119935800	Enhancers	HSMM	muscle
13	chr6:119933800-119935800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:119934200-119935200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:119934200-119935600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:119934200-119942400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:119934400-119939600	Weak transcription	HSMMtube	muscle
18	chr6:119934600-119935400	Weak transcription	NHEK	skin
19	chr6:119934600-119935400	Weak transcription	NHLF	lung
20	chr6:119934600-119940600	Weak transcription	HMEC	breast
21	chr6:119934800-119935000	Weak transcription	GM12878-XiMat	blood
22	chr6:119934800-119942000	Weak transcription	Osteobl	bone

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