Variant report

Variant	rs9320697
Chromosome Location	chr6:119923168-119923169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119920937..119923540-chr6:119948943..119951782,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11153833	0.86[EUR][1000 genomes]
rs11153838	0.80[EUR][1000 genomes]
rs11153840	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11962344	0.88[EUR][1000 genomes]
rs11969898	0.88[EUR][1000 genomes]
rs12524607	0.86[EUR][1000 genomes]
rs1572957	0.87[AFR][1000 genomes]
rs17238430	0.86[EUR][1000 genomes]
rs17238563	0.81[EUR][1000 genomes]
rs1977147	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2024733	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2024734	0.87[AFR][1000 genomes]
rs2794256	0.86[ASN][1000 genomes]
rs4245503	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4946431	0.85[EUR][1000 genomes]
rs4946433	0.87[EUR][1000 genomes]
rs4946434	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56279051	0.88[EUR][1000 genomes]
rs62418741	0.83[EUR][1000 genomes]
rs62418744	0.82[EUR][1000 genomes]
rs62418963	0.84[EUR][1000 genomes]
rs62418964	0.86[EUR][1000 genomes]
rs62418966	0.86[EUR][1000 genomes]
rs62418970	0.88[EUR][1000 genomes]
rs6902363	0.82[EUR][1000 genomes]
rs6922474	0.82[EUR][1000 genomes]
rs72963141	0.86[EUR][1000 genomes]
rs72963152	0.86[EUR][1000 genomes]
rs7738144	0.84[EUR][1000 genomes]
rs7752178	0.84[EUR][1000 genomes]
rs7754535	0.87[AFR][1000 genomes]
rs807299	0.83[ASN][1000 genomes]
rs807302	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807303	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807309	0.81[ASN][1000 genomes]
rs809889	0.86[ASN][1000 genomes]
rs813955	0.86[ASN][1000 genomes]
rs9285433	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9320698	0.87[AFR][1000 genomes]
rs9372544	0.87[AFR][1000 genomes]
rs9374809	0.87[AFR][1000 genomes]
rs9374810	0.87[AFR][1000 genomes]
rs9385080	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9398517	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119912400-119923200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:119917000-119924600	Weak transcription	Pancreas	Pancrea
3	chr6:119922800-119924000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:119922800-119924000	Enhancers	NHEK	skin
5	chr6:119922800-119925000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:119923000-119923600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:119923000-119923800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:119923000-119924000	Enhancers	NHDF-Ad	bronchial
9	chr6:119923000-119924400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:119923000-119925000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:119923000-119925000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:119923000-119925000	Enhancers	HSMM	muscle
13	chr6:119923000-119925000	Enhancers	Osteobl	bone
14	chr6:119923000-119925600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:119923000-119925600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:119923000-119925600	Enhancers	HMEC	breast

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