Variant report

Variant	rs7754883
Chromosome Location	chr6:144469659-144469660
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144469135..144471504-chr6:144482402..144484343,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs12660406	1.00[EUR][1000 genomes]
rs12660531	1.00[EUR][1000 genomes]
rs12662696	1.00[EUR][1000 genomes]
rs12662872	1.00[EUR][1000 genomes]
rs12663380	1.00[EUR][1000 genomes]
rs12664245	1.00[EUR][1000 genomes]
rs12664304	1.00[EUR][1000 genomes]
rs12665850	1.00[EUR][1000 genomes]
rs17073442	1.00[EUR][1000 genomes]
rs17073463	1.00[EUR][1000 genomes]
rs17073482	1.00[EUR][1000 genomes]
rs17073498	1.00[EUR][1000 genomes]
rs17073506	1.00[EUR][1000 genomes]
rs17073524	1.00[EUR][1000 genomes]
rs17073528	1.00[EUR][1000 genomes]
rs17073529	1.00[EUR][1000 genomes]
rs17073544	1.00[EUR][1000 genomes]
rs17073571	1.00[EUR][1000 genomes]
rs17073580	1.00[EUR][1000 genomes]
rs17073598	1.00[EUR][1000 genomes]
rs17073602	1.00[EUR][1000 genomes]
rs17073610	1.00[EUR][1000 genomes]
rs17073623	1.00[EUR][1000 genomes]
rs17073629	1.00[EUR][1000 genomes]
rs17073631	1.00[EUR][1000 genomes]
rs17073672	1.00[EUR][1000 genomes]
rs17073678	1.00[EUR][1000 genomes]
rs17840301	1.00[EUR][1000 genomes]
rs1998367	1.00[EUR][1000 genomes]
rs34140249	1.00[EUR][1000 genomes]
rs34502493	1.00[EUR][1000 genomes]
rs35325795	1.00[EUR][1000 genomes]
rs35681372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36007040	1.00[EUR][1000 genomes]
rs55684976	1.00[EUR][1000 genomes]
rs56897751	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57069580	1.00[EUR][1000 genomes]
rs57380483	1.00[EUR][1000 genomes]
rs57485302	1.00[EUR][1000 genomes]
rs57592921	1.00[EUR][1000 genomes]
rs57704478	1.00[EUR][1000 genomes]
rs57712072	1.00[EUR][1000 genomes]
rs57751197	1.00[EUR][1000 genomes]
rs58084770	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58396690	1.00[EUR][1000 genomes]
rs58590469	1.00[EUR][1000 genomes]
rs58847604	1.00[EUR][1000 genomes]
rs58849686	1.00[EUR][1000 genomes]
rs58857193	1.00[EUR][1000 genomes]
rs59612420	1.00[EUR][1000 genomes]
rs59614628	1.00[EUR][1000 genomes]
rs59718967	1.00[EUR][1000 genomes]
rs59803839	1.00[EUR][1000 genomes]
rs59936141	1.00[EUR][1000 genomes]
rs60053855	1.00[EUR][1000 genomes]
rs60188478	1.00[EUR][1000 genomes]
rs60439721	1.00[EUR][1000 genomes]
rs60484357	1.00[EUR][1000 genomes]
rs60559108	1.00[EUR][1000 genomes]
rs60634096	1.00[EUR][1000 genomes]
rs60762289	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60811448	1.00[EUR][1000 genomes]
rs60857439	1.00[EUR][1000 genomes]
rs60859726	1.00[EUR][1000 genomes]
rs61087655	1.00[EUR][1000 genomes]
rs61211447	1.00[EUR][1000 genomes]
rs61249035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61327932	1.00[EUR][1000 genomes]
rs6917261	1.00[EUR][1000 genomes]
rs6927798	1.00[EUR][1000 genomes]
rs73589002	1.00[EUR][1000 genomes]
rs73591113	1.00[EUR][1000 genomes]
rs73780508	1.00[EUR][1000 genomes]
rs7741466	1.00[EUR][1000 genomes]
rs7745240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7747486	1.00[EUR][1000 genomes]
rs7751876	1.00[EUR][1000 genomes]
rs7768531	1.00[EUR][1000 genomes]
rs9496932	1.00[EUR][1000 genomes]
rs9496935	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144463000-144470600	Weak transcription	GM12878-XiMat	blood
2	chr6:144463200-144470600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:144466400-144470800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:144466600-144470600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:144467000-144470800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:144467000-144470800	Weak transcription	HUVEC	blood vessel
7	chr6:144467400-144470000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:144467600-144470400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:144468200-144470800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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