Variant report
Variant | rs7760490 |
---|---|
Chromosome Location | chr6:54697196-54697197 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000168143 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10223546 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10456688 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10807484 | 0.86[ASN][1000 genomes] |
rs10807485 | 0.86[ASN][1000 genomes] |
rs10948852 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10948853 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10948862 | 0.84[ASN][1000 genomes] |
rs10948864 | 0.87[ASN][1000 genomes] |
rs12191299 | 0.86[ASN][1000 genomes] |
rs12191386 | 0.86[ASN][1000 genomes] |
rs12194667 | 0.86[ASN][1000 genomes] |
rs12195438 | 0.83[ASN][1000 genomes] |
rs12196314 | 0.96[ASN][1000 genomes] |
rs12201892 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12202062 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12203709 | 0.86[ASN][1000 genomes] |
rs12205222 | 0.80[ASN][1000 genomes] |
rs12205372 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12207559 | 0.85[ASN][1000 genomes] |
rs12216039 | 0.85[ASN][1000 genomes] |
rs12216049 | 0.85[ASN][1000 genomes] |
rs12216186 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs13195757 | 0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1567164 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1827513 | 0.81[EUR][1000 genomes] |
rs1910357 | 0.86[ASN][1000 genomes] |
rs2270989 | 0.86[ASN][1000 genomes] |
rs34713378 | 0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4712071 | 0.82[ASN][1000 genomes] |
rs4712075 | 0.86[ASN][1000 genomes] |
rs4715480 | 0.88[EUR][1000 genomes] |
rs4715481 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs4715482 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4715484 | 0.93[EUR][1000 genomes] |
rs62412605 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6908745 | 0.86[ASN][1000 genomes] |
rs6908940 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6918226 | 0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6922162 | 0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6922543 | 0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6939992 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs72957572 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7452200 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7747352 | 0.87[ASN][1000 genomes] |
rs9296768 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9296769 | 0.86[ASN][1000 genomes] |
rs9464138 | 0.81[ASN][1000 genomes] |
rs9464139 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9464148 | 0.87[ASN][1000 genomes] |
rs9464149 | 0.87[ASN][1000 genomes] |
rs9475004 | 0.80[EUR][1000 genomes] |
rs9475006 | 0.88[EUR][1000 genomes] |
rs9475011 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9475013 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9475017 | 0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9475021 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9475029 | 0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9475038 | 0.87[ASN][1000 genomes] |
rs9475039 | 0.86[ASN][1000 genomes] |
rs9475040 | 0.86[ASN][1000 genomes] |
rs9475041 | 0.87[ASN][1000 genomes] |
rs9475045 | 0.82[ASN][1000 genomes] |
rs9475046 | 0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | esv2763553 | chr6:54687979-54820487 | Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |