Variant report

Variant	rs4715482
Chromosome Location	chr6:54666243-54666244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10223546	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10223849	0.96[ASN][1000 genomes]
rs10440848	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.93[TSI][hapmap]
rs10456688	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10948852	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10948853	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12196314	0.90[CEU][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12199827	0.81[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes]
rs12201892	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12202062	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12205372	0.83[ASN][1000 genomes]
rs12216186	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13195757	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1567164	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1827513	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4712071	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4715480	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4715481	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4715484	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58988305	0.94[ASN][1000 genomes]
rs62412605	0.83[ASN][1000 genomes]
rs6908940	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6918226	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6922162	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6922543	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6939992	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957572	0.83[ASN][1000 genomes]
rs7452200	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7751955	0.96[CEU][hapmap]
rs7760490	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9296768	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9464138	0.98[ASN][1000 genomes]
rs9464139	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9474997	0.88[ASN][1000 genomes]
rs9475001	0.87[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9475004	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9475005	0.87[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs9475006	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9475011	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9475013	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9475017	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9475021	0.95[ASN][1000 genomes]
rs9475029	0.80[ASN][1000 genomes]
rs952188	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54653200-54667800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:54663000-54667800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:54664800-54666600	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr6:54665600-54666800	Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr6:54666200-54666600	Flanking Active TSS	Hela-S3	cervix
6	chr6:54666200-54666600	Flanking Active TSS	NHEK	skin
7	chr6:54666200-54666800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:54666200-54668200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:54666200-54668200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:54666200-54668200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:54666200-54668200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:54666200-54668200	Enhancers	HMEC	breast
13	chr6:54666200-54669200	Enhancers	Fetal Intestine Large	intestine

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