Variant report

Variant	rs9475021
Chromosome Location	chr6:54686986-54686987
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54682109..54683920-chr6:54686335..54689206,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10223546	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10223849	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10456688	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10948852	0.96[ASN][1000 genomes]
rs10948853	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12196314	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12199827	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12201892	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12202062	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12205372	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12216186	0.96[ASN][1000 genomes]
rs13195757	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1567164	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1827513	0.94[ASN][1000 genomes]
rs1910357	0.82[EUR][1000 genomes]
rs34713378	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4712071	0.96[ASN][1000 genomes]
rs4715480	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715481	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4715482	0.95[ASN][1000 genomes]
rs4715484	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58988305	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62412605	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6908940	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6918226	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6922162	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6922543	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6939992	0.95[ASN][1000 genomes]
rs72957572	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7452200	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7760490	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9296768	0.96[ASN][1000 genomes]
rs9296769	0.82[EUR][1000 genomes]
rs9464138	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9464139	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9464148	0.82[EUR][1000 genomes]
rs9474997	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9475001	0.92[ASN][1000 genomes]
rs9475004	0.94[ASN][1000 genomes]
rs9475005	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475006	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475011	0.95[ASN][1000 genomes]
rs9475013	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9475017	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9475029	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9475038	0.82[EUR][1000 genomes]
rs9475039	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54683400-54689600	Weak transcription	Pancreas	Pancrea

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