Variant report

Variant	rs7761022
Chromosome Location	chr6:4893278-4893279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4776259..4779044-chr6:4892651..4894301,2	K562	blood:
2	chr6:4892875..4894403-chr6:4902435..4905171,2	K562	blood:

Variant related genes	Relation type
ENSG00000153046	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11967088	1.00[ASN][1000 genomes]
rs1630478	1.00[ASN][1000 genomes]
rs6933949	1.00[ASN][1000 genomes]
rs6938896	1.00[ASN][1000 genomes]
rs73348345	0.81[AFR][1000 genomes]
rs73348359	1.00[ASN][1000 genomes]
rs73348363	1.00[ASN][1000 genomes]
rs7769900	1.00[ASN][1000 genomes]
rs7771142	1.00[ASN][1000 genomes]
rs7771355	1.00[ASN][1000 genomes]
rs808590	1.00[ASN][1000 genomes]
rs808594	1.00[ASN][1000 genomes]
rs808595	1.00[ASN][1000 genomes]
rs808596	1.00[ASN][1000 genomes]
rs808597	1.00[ASN][1000 genomes]
rs808599	1.00[ASN][1000 genomes]
rs808601	1.00[ASN][1000 genomes]
rs808602	1.00[ASN][1000 genomes]
rs808604	1.00[ASN][1000 genomes]
rs808618	1.00[ASN][1000 genomes]
rs808625	1.00[ASN][1000 genomes]
rs808626	1.00[ASN][1000 genomes]
rs808627	1.00[ASN][1000 genomes]
rs808628	1.00[ASN][1000 genomes]
rs808630	1.00[ASN][1000 genomes]
rs808632	1.00[ASN][1000 genomes]
rs809471	1.00[ASN][1000 genomes]
rs9502248	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4872200-4898800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:4874200-4894000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:4878200-4905200	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:4879600-4906200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:4880400-4907800	Weak transcription	Small Intestine	intestine
6	chr6:4880600-4898600	Weak transcription	HSMM	muscle
7	chr6:4882800-4894400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:4882800-4909000	Weak transcription	Brain Anterior Caudate	brain
9	chr6:4884000-4898400	Weak transcription	Psoas Muscle	Psoas
10	chr6:4884800-4903800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:4885000-4908200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:4887200-4901400	Weak transcription	HSMMtube	muscle
13	chr6:4888000-4906400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:4889200-4906400	Weak transcription	NHLF	lung
15	chr6:4889400-4895800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:4889400-4898400	Weak transcription	Fetal Lung	lung
17	chr6:4889600-4898400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:4890200-4898800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:4890200-4901800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:4890400-4897800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:4890600-4913800	Weak transcription	Hela-S3	cervix
22	chr6:4890800-4894000	Weak transcription	A549	lung
23	chr6:4890800-4900600	Weak transcription	NH-A	brain
24	chr6:4891000-4894600	Strong transcription	Primary B cells from cord blood	blood
25	chr6:4891200-4894800	Strong transcription	Primary T cells from cord blood	blood
26	chr6:4891200-4896200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:4891200-4899000	Weak transcription	Brain Germinal Matrix	brain
28	chr6:4891200-4905600	Weak transcription	Fetal Kidney	kidney
29	chr6:4891200-4907400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:4891400-4894600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:4891400-4895200	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr6:4891400-4895200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:4891400-4899200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:4891400-4900400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:4891400-4906400	Weak transcription	Fetal Heart	heart
36	chr6:4891600-4893800	Strong transcription	HepG2	liver
37	chr6:4891600-4894600	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr6:4891600-4899000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:4891600-4899000	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr6:4891800-4894600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:4891800-4894800	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:4891800-4898000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:4892000-4893400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:4892000-4893400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:4892000-4893600	Strong transcription	Left Ventricle	heart
46	chr6:4892000-4894200	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr6:4892000-4894600	Strong transcription	Aorta	Aorta
48	chr6:4892000-4894600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr6:4892000-4894600	Strong transcription	Ovary	ovary
50	chr6:4892000-4894600	Strong transcription	Sigmoid Colon	Sigmoid Colon

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