Variant report

Variant	rs7762161
Chromosome Location	chr6:167560272-167560273
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:167560261-167561045	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr6:167560111-167561572	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTBP2	chr6:167560269-167561090	H1-hESC	embryonic stem cell:	n/a	n/a
4	E2F6	chr6:167560206-167561183	H1-hESC	embryonic stem cell:	n/a	n/a
5	JUND	chr6:167560018-167561139	H1-hESC	embryonic stem cell:	n/a	n/a
6	RAD21	chr6:167560256-167560854	H1-hESC	embryonic stem cell:	n/a	chr6:167560374-167560386
7	MAX	chr6:167560240-167561612	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr6:167560223-167561201	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
TCP10L2	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3093000	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3093002	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4710187	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4710189	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4710190	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6902577	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6903856	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6935031	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs723558	0.86[ASN][1000 genomes]
rs879840	0.81[JPT][hapmap]
rs928344	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9355616	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
6	esv2752099	chr6:167448181-167579102	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1018193	chr6:167491589-167797294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv538544	chr6:167491589-167797294	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv469673	chr6:167500376-167658532	Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv482439	chr6:167500376-167658532	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv2758094	chr6:167501204-167845935	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	esv2759492	chr6:167501204-168176733	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv482873	chr6:167521620-167679133	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167534000-167573400	Weak transcription	Right Atrium	heart
2	chr6:167543400-167565000	Weak transcription	Spleen	Spleen
3	chr6:167550600-167560400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:167552800-167560800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:167556000-167560600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:167558400-167560600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:167558600-167562000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:167559000-167561800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:167559000-167562000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:167559400-167562000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr6:167559600-167560600	Active TSS	Primary hematopoietic stem cells	blood
12	chr6:167559600-167560800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:167559800-167560800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:167559800-167561000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr6:167560000-167560400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr6:167560000-167560400	Bivalent/Poised TSS	Fetal Brain Female	brain
17	chr6:167560000-167560600	Active TSS	Brain Anterior Caudate	brain
18	chr6:167560000-167560800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:167560000-167560800	Bivalent Enhancer	Fetal Stomach	stomach
20	chr6:167560000-167561200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
21	chr6:167560000-167561600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:167560000-167564600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:167560200-167560400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:167560200-167560400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:167560200-167560400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:167560200-167560400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr6:167560200-167560400	Active TSS	Brain Germinal Matrix	brain
28	chr6:167560200-167560400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
29	chr6:167560200-167560600	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr6:167560200-167560600	Enhancers	Primary B cells from peripheral blood	blood
31	chr6:167560200-167560800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:167560200-167561000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:167560200-167561000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:167560200-167561000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr6:167560200-167561000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr6:167560200-167561000	Enhancers	Fetal Brain Male	brain
37	chr6:167560200-167564400	Weak transcription	Primary B cells from cord blood	blood

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