Variant report
| Variant | rs7765399 |
|---|---|
| Chromosome Location | chr6:102309680-102309681 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:102304730..102306857-chr6:102309249..102312127,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1223050 | 1.00[CEU][hapmap] |
| rs1335020 | 1.00[CEU][hapmap] |
| rs1361448 | 1.00[CEU][hapmap] |
| rs1465170 | 1.00[CEU][hapmap];0.82[YRI][hapmap] |
| rs17062729 | 1.00[CEU][hapmap] |
| rs17062738 | 1.00[CEU][hapmap] |
| rs2051445 | 1.00[CEU][hapmap] |
| rs6570994 | 1.00[CEU][hapmap] |
| rs6570995 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs6905533 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6921394 | 1.00[AMR][1000 genomes] |
| rs73496635 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73496637 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73496643 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73496645 | 1.00[AMR][1000 genomes] |
| rs73512786 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73512788 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73761437 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73761455 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73761464 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7449816 | 1.00[CEU][hapmap] |
| rs7744537 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs7750981 | 1.00[CEU][hapmap] |
| rs7754135 | 1.00[CEU][hapmap];0.96[YRI][hapmap] |
| rs7754590 | 1.00[CEU][hapmap] |
| rs7768392 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv830743 | chr6:102284082-102459192 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv463994 | chr6:102303080-102346746 | Enhancers Active TSS Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv604318 | chr6:102303080-102346746 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv604319 | chr6:102307069-102355867 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
