Variant report

Variant	rs7767090
Chromosome Location	chr6:15988515-15988516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1544215	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1891516	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2327931	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2327946	0.84[AFR][1000 genomes]
rs4236168	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4422610	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4568455	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4582390	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs4716022	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4716023	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4716024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6459438	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905830	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766337	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9296997	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464848	0.83[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15986800-15989200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:15987400-15989000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:15987400-15989200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:15987600-15988600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:15987800-15988600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:15987800-15988600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:15987800-15988600	Enhancers	Fetal Heart	heart
8	chr6:15988000-15988600	Enhancers	Fetal Brain Male	brain
9	chr6:15988000-15989000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:15988000-15995000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:15988400-15991200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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