Variant report

Variant	rs9296997
Chromosome Location	chr6:15980740-15980741
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1544215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1891516	0.85[EUR][1000 genomes]
rs2327931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2327946	0.92[AFR][1000 genomes]
rs4236168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4422610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4568455	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4582390	0.83[AMR][1000 genomes]
rs4716022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4716023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4716024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6459438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7767090	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464848	0.83[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15970600-15980800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:15978000-15986400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:15978800-15986200	Weak transcription	K562	blood
4	chr6:15979600-15981200	Weak transcription	Psoas Muscle	Psoas
5	chr6:15980200-15982600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:15980600-15981600	Enhancers	Fetal Muscle Leg	muscle
7	chr6:15980600-15981600	Enhancers	HMEC	breast
8	chr6:15980600-15981800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:15980600-15982000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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