Variant report

Variant	rs7771835
Chromosome Location	chr6:38304035-38304036
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38302380..38305369-chr6:38307558..38309248,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10484930	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs12055513	1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[ASN][1000 genomes]
rs12524225	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs12529549	0.82[ASN][1000 genomes]
rs12660215	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12660323	0.80[ASN][1000 genomes]
rs12664020	0.83[EUR][1000 genomes]
rs12664994	0.82[JPT][hapmap]
rs13197522	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs16890552	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs16890561	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2395697	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28360643	0.87[EUR][1000 genomes]
rs36094313	0.85[EUR][1000 genomes]
rs4714145	0.83[JPT][hapmap]
rs57575973	0.91[ASN][1000 genomes]
rs57934228	0.82[ASN][1000 genomes]
rs59459724	0.80[ASN][1000 genomes]
rs60500173	0.81[ASN][1000 genomes]
rs60814959	0.87[EUR][1000 genomes]
rs6917308	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6938840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714930	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73422824	0.84[ASN][1000 genomes]
rs73422833	0.84[ASN][1000 genomes]
rs764347	0.92[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs871184	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9349065	0.81[JPT][hapmap]
rs9349069	0.90[ASN][1000 genomes]
rs9349071	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9366956	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9369046	0.82[ASN][1000 genomes]
rs9369047	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9369050	0.95[ASN][1000 genomes]
rs9369052	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9380734	0.81[ASN][1000 genomes]
rs9380735	0.90[ASN][1000 genomes]
rs9380736	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9394487	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38278000-38310600	Weak transcription	Gastric	stomach
2	chr6:38278400-38305400	Weak transcription	Pancreas	Pancrea
3	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:38288000-38305600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:38291000-38305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:38291400-38317600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:38299200-38313400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:38299800-38317800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:38300200-38304800	Weak transcription	Fetal Brain Female	brain
10	chr6:38301600-38305800	Weak transcription	HSMM	muscle
11	chr6:38301600-38306800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:38301600-38313400	Weak transcription	Psoas Muscle	Psoas
13	chr6:38301600-38315800	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:38301600-38324600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:38301800-38310400	Weak transcription	Primary B cells from cord blood	blood
16	chr6:38301800-38313400	Weak transcription	Aorta	Aorta
17	chr6:38302000-38310400	Weak transcription	Primary T cells from cord blood	blood
18	chr6:38302000-38315800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:38302000-38318200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:38302200-38315800	Weak transcription	Brain Substantia Nigra	brain
21	chr6:38303000-38304800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:38303600-38304800	Weak transcription	Fetal Stomach	stomach
23	chr6:38303600-38306800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:38303800-38305000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
25	chr6:38303800-38311000	Weak transcription	Left Ventricle	heart
26	chr6:38304000-38304200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
27	chr6:38304000-38305000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:38304000-38310400	Weak transcription	Monocytes-CD14+_RO01746	blood

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