Variant report

Variant	rs9380736
Chromosome Location	chr6:38306787-38306788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10484930	0.81[JPT][hapmap]
rs11964070	0.87[AMR][1000 genomes]
rs12055513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12524225	0.82[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12527432	0.80[YRI][hapmap]
rs12664994	0.82[JPT][hapmap]
rs16890552	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs16890561	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16890588	0.87[AMR][1000 genomes]
rs2395697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4714145	0.83[JPT][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57012325	0.80[ASN][1000 genomes]
rs57575973	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57934228	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs59459724	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6917308	0.82[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6938840	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs714930	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73422824	0.83[ASN][1000 genomes]
rs73422833	0.83[ASN][1000 genomes]
rs764347	0.82[CHB][hapmap];0.80[JPT][hapmap];0.92[ASN][1000 genomes]
rs7771835	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs871182	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs871184	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9349065	0.81[JPT][hapmap]
rs9349069	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349071	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349074	0.87[AMR][1000 genomes]
rs9357268	0.87[AMR][1000 genomes]
rs9366956	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9369046	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9369047	0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9369050	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9369052	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9369053	0.87[AMR][1000 genomes]
rs9380728	0.83[YRI][hapmap]
rs9380734	0.86[ASN][1000 genomes]
rs9380735	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380738	0.87[AMR][1000 genomes]
rs9394487	0.81[JPT][hapmap];0.80[YRI][hapmap]
rs9394490	0.84[AFR][1000 genomes]
rs9394491	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv602957	chr6:38305770-38395874	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38278000-38310600	Weak transcription	Gastric	stomach
2	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:38291400-38317600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:38299200-38313400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:38299800-38317800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:38301600-38306800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:38301600-38313400	Weak transcription	Psoas Muscle	Psoas
8	chr6:38301600-38315800	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:38301600-38324600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:38301800-38310400	Weak transcription	Primary B cells from cord blood	blood
11	chr6:38301800-38313400	Weak transcription	Aorta	Aorta
12	chr6:38302000-38310400	Weak transcription	Primary T cells from cord blood	blood
13	chr6:38302000-38315800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:38302000-38318200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:38302200-38315800	Weak transcription	Brain Substantia Nigra	brain
16	chr6:38303600-38306800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:38303800-38311000	Weak transcription	Left Ventricle	heart
18	chr6:38304000-38310400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:38304600-38323000	Weak transcription	Ovary	ovary
20	chr6:38304800-38306800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:38305000-38309400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr6:38305000-38309600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:38305000-38317600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:38305000-38318000	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:38305600-38306800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:38305800-38308600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:38305800-38310800	Weak transcription	Pancreas	Pancrea
28	chr6:38305800-38315200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:38306000-38307000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:38306000-38313400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:38306000-38315800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:38306200-38314200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:38306200-38314400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:38306400-38313000	Weak transcription	NHDF-Ad	bronchial
35	chr6:38306400-38313600	Weak transcription	HSMMtube	muscle
36	chr6:38306400-38314200	Weak transcription	HSMM	muscle
37	chr6:38306600-38306800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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